DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1278 contig Ccv1_Contig1278:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: IF4A1_PANTR (Eukaryotic initiation factor 4A-I OS=Pan troglodytes GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 70/220 (31.82%), Postives = 116/220 (52.73%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA+Q++K        +   C    GGT +  +++ L       +VGTPGRV D++ R  L+   ++  VLDEAD+MLS GF + +  I ++L  N Q ++ SATMP  +  +T K++++P+ +  +   ++   +GI  + I     E        + E     + ++F  T+R  D L   M A+ +    +HGD+ Q +R+  +  FR G
Sbjct:  104 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI--LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 321          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: IF4A1_MOUSE (Eukaryotic initiation factor 4A-I OS=Mus musculus GN=Eif4a1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 70/220 (31.82%), Postives = 116/220 (52.73%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA+Q++K        +   C    GGT +  +++ L       +VGTPGRV D++ R  L+   ++  VLDEAD+MLS GF + +  I ++L  N Q ++ SATMP  +  +T K++++P+ +  +   ++   +GI  + I     E        + E     + ++F  T+R  D L   M A+ +    +HGD+ Q +R+  +  FR G
Sbjct:  104 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI--LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 321          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: IF4A1_HUMAN (Eukaryotic initiation factor 4A-I OS=Homo sapiens GN=EIF4A1 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 70/220 (31.82%), Postives = 116/220 (52.73%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA+Q++K        +   C    GGT +  +++ L       +VGTPGRV D++ R  L+   ++  VLDEAD+MLS GF + +  I ++L  N Q ++ SATMP  +  +T K++++P+ +  +   ++   +GI  + I     E        + E     + ++F  T+R  D L   M A+ +    +HGD+ Q +R+  +  FR G
Sbjct:  104 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI--LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 321          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: IF4A1_BOVIN (Eukaryotic initiation factor 4A-I OS=Bos taurus GN=EIF4A1 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 70/220 (31.82%), Postives = 116/220 (52.73%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA+Q++K        +   C    GGT +  +++ L       +VGTPGRV D++ R  L+   ++  VLDEAD+MLS GF + +  I ++L  N Q ++ SATMP  +  +T K++++P+ +  +   ++   +GI  + I     E        + E     + ++F  T+R  D L   M A+ +    +HGD+ Q +R+  +  FR G
Sbjct:  104 LVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRI--LVKKEELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG 321          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 70/220 (31.82%), Postives = 114/220 (51.82%), Query Frame = 3
Query:   12 CLVLAPTRELAKQVEKEFHESAPSL--DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDG 662
            CL+L PTRELA Q  +        L  + +   GGT +   +  L   V  VVGTPGR++DL  +N  +LSE    ++DEAD++LS+ F   +E +L+  P++RQ M+FSAT P  ++  ++K + NP  ++L+   D+    GI  Y       +K   +  L ++  +  + I+F  +    + LA  + +  Y+C   H  + Q  R R    FR+G
Sbjct:  107 CLILVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTTLRDDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLM---DELTLRGITQYYAFVEEKQKVHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITELGYSCFYSHAKMQQQARNRVFHDFRNG 322          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.580e-24
Identity = 73/220 (33.18%), Postives = 112/220 (50.91%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTICVY--GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            L+L PTRELA Q  +        + T C+   GGT +   +  L   V  +VGTPGRV+DL  R  ++LSE    V+DEAD+MLS  F   +E ILE  P NRQ ++FSAT P  ++S  +K+L  P  ++L+   D+    GI  +       +K   +  L ++  +  + I+F  +    + LA  + +  Y+C   H  + Q  R +    FR G+
Sbjct:  102 LILVPTRELALQTSQVVRTLGKHVGTQCMVTTGGTSLRDDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKMLSREFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLM---DELTLKGISQFYAFVEEKQKLHCLNTLFSK-LQINQSIIFCNSTNRVELLAKKITELGYSCYYSHAKMPQQARNKVFHEFRQGK 317          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: PRP28_DEBHA (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Debaryomyces hansenii GN=PRP28 PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 76/250 (30.40%), Postives = 124/250 (49.60%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKE--FHESAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP----------------QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYE--KPSIIGQLIT------EHAKGGKCIVFTQTKRDADRLAHAMAKS--YNCEPLHGDISQSQRERTLSAFRDGR 665
            PL L+LAPTRELA Q+ KE        +L+ + + GG      + ++  GV  VV TPGR+ID ++R  +NLS   F  +DEAD+M+ +GF + ++ IL  LP                + R  +MF+AT+ P I  +T  YL  P  L +  VG++   +      +    S  E   P  + +L +      +  +    I+F   K+  + LA+ +++    +   +HG  SQ  RER + +FR+G+
Sbjct:  238 PLGLILAPTRELALQITKEAKLFGDKLNLNVVTIIGGHQYEETVHSVRNGVHIVVATPGRLIDSLERGIINLSNCYFFTMDEADKMIDMGFEKSLQSILNYLPASEKLETTIDGKIFNIKKRITLMFTATISPPIEKITKNYLMKPGYLFIGNVGEAVDNINQQFEYFGARQSSDEILDPKKLDKLFSILRFHKDENRNYSIIIFANFKKACEELAYELSRKGFSDNTVIHGSKSQEARERAIDSFREGK 487          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: IF4A2_MACFA (Eukaryotic initiation factor 4A-II OS=Macaca fascicularis GN=EIF4A2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 72/220 (32.73%), Postives = 116/220 (52.73%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTIC--VYGGTPISHQMRALDYGVD-AVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA+Q++K        +   C    GGT + ++M+ L       VVGTPGRV D++ R  L+   ++  VLDEAD MLS GF + +  I ++L  + Q ++ SATMP  +  +T K++++P+ +  +   ++   +GI  + I     E        + E     + ++F  T+R  D L   M A+ +    LHGD+ Q +R+  +  FR G
Sbjct:  106 LVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADGMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI--LVKKEELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSG 323          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DHH1_ASHGO (ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii GN=DHH1 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.675e-24
Identity = 72/220 (32.73%), Postives = 108/220 (49.09%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHESAPSLDTICVY--GGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            L++ PTRELA Q  +            C+   GGT +   +  L+  V  +VGTPGRV+DL  R   +LSE    V+DEAD+MLS  F   VE IL  LPQN Q ++FSAT P  ++    K+L  P  ++L+   D+    GI  Y       +K   +  L ++  +  + I+F  +    + LA  +    Y+C   H  + Q +R +    FR G+
Sbjct:  101 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDIMRLNEPVHVLVGTPGRVLDLASRKVADLSECSLFVMDEADKMLSRDFKSLVEQILSFLPQNHQSLLFSATFPLTVKEFMVKHLNKPYEINLM---DELTLKGITQYYAFVEERQKLHCLNTLFSK-LQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK 316          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RRP3_GIBZE (ATP-dependent rRNA helicase RRP3 OS=Gibberella zeae GN=RRP3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.106e-24
Identity = 77/220 (35.00%), Postives = 119/220 (54.09%), Query Frame = 3
Query:   15 LVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVID-LIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            LVLAPTRELA Q+ + F    S  SL    + GG  +  Q  AL      VV TPGR++D L K    +L  ++++++DEAD++L + F   ++ IL+ +P+ R+  +FSAT+   I SL    L++P+ V +  +  Q ++  +  Y       +   +I  LI EHA G   IVFT+T  +  R++  +    +   PLHG +SQS R   L+ FR G
Sbjct:  132 LVLAPTRELATQIGQAFEALGSLISLRCAVIVGGLDMVPQAIALGKKPHIVVATPGRLVDHLEKTKGFSLRTLKYLIMDEADRLLDMDFGPSIDKILKFVPRERRTYLFSATISSKIESLQRASLRDPVKVSISSNKYQTVSTLLQNYLFIPHPQKDVHLI-YLINEHA-GQSTIVFTRTVWETQRVSILLRTLGFGAIPLHGQLSQSSRLGALNKFRSG 349          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_PANTR3.580e-2431.82Eukaryotic initiation factor 4A-I OS=Pan troglodyt... [more]
IF4A1_MOUSE3.580e-2431.82Eukaryotic initiation factor 4A-I OS=Mus musculus ... [more]
IF4A1_HUMAN3.580e-2431.82Eukaryotic initiation factor 4A-I OS=Homo sapiens ... [more]
IF4A1_BOVIN3.580e-2431.82Eukaryotic initiation factor 4A-I OS=Bos taurus GN... [more]
DHH1_MAGGR3.580e-2431.82ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
DHH1_CANAL3.580e-2433.18ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
PRP28_DEBHA4.675e-2430.40Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
IF4A2_MACFA4.675e-2432.73Eukaryotic initiation factor 4A-II OS=Macaca fasci... [more]
DHH1_ASHGO4.675e-2432.73ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii... [more]
RRP3_GIBZE6.106e-2435.00ATP-dependent rRNA helicase RRP3 OS=Gibberella zea... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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