DY258881

Overview
NameDY258881
Unique NameDY258881
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length671
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1278 contig Ccv1_Contig1278:1..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_EMENI (ATP-dependent RNA helicase ded1 OS=Emericella nidulans GN=ded1 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 82/230 (35.65%), Postives = 132/230 (57.39%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGRF 668
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  +++++LDEAD+ML +GF   +  I+  E +P   +RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +         ++K S++  ++  H   G  ++F +TKR AD L+  +  + +    +HGD +Q +RER L  FR GR+
Sbjct:  272 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPNVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTTGLTLIFVETKRMADALSEFLINQRFPATAIHGDRTQRERERALEMFRSGRY 497          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DEAD_BUCBP (Cold-shock DEAD box protein A homolog OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=deaD PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 7.957e-32
Identity = 81/226 (35.84%), Postives = 123/226 (54.42%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSL---DTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGRFN 671
            P  LVL PTRELA QV + F   +  L     + +YGG     Q+++L  G   +VGTPGR++D +KR  L+LS +  +VLDEAD+ML +GF EDVE I+  +P   Q  +FSATMP  IR ++ +++KNP  + +       +     +      +Y K +       E       I+F +TK     ++  + +  YN   L+GD++QS RE+TL   +DGR +
Sbjct:   75 PQILVLTPTRELAVQVAEAFSNFSKKLIGVHVLALYGGQRYDLQLKSLRKGPQIIVGTPGRLLDHLKRRTLSLSNLHSLVLDEADEMLRMGFIEDVETIMTEIPDRHQTALFSATMPEAIRRISRRFMKNPKEIRI----QSNITTRPDIQQSYWMVYGKKTDALIRFLEAEDFSATIIFVRTKNATLEVSEVLERYGYNSAALNGDMNQSLREQTLEKLKDGRLD 296          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 85/229 (37.12%), Postives = 134/229 (58.52%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P  Q+RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +          +K S++  ++  HA  G  ++F +TKR AD L+  +  +++    +HGD +Q +RER L  FR+GR
Sbjct:  272 PTSLILAPTRELVSQIFDESRKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLQNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPQVQDRQTLMFSATFPRDIQMLARDFLKDYIFLSVGRVGSTSENITQKVEY----VEDVDKRSVLLDILHSHA-NGLTLIFVETKRMADSLSDFLINQNFPATSIHGDRTQRERERALEFFRNGR 495          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_SCHPO (ATP-dependent RNA helicase dbp3 OS=Schizosaccharomyces pombe GN=dbp3 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 78/231 (33.77%), Postives = 126/231 (54.55%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHE--SAPSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQ-----NRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGG----KCIVFTQTKRDADRLAHAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  LV++PTRELA Q  +  +      +L  + VYGG P S Q RA       ++GTPGR++DLI   +++ S+V ++VLDEAD+ML  GF +D+  I+   P      +RQ + FSAT P  +R+L   +LK+P+ + +  D      +   +  I      K  ++  L+ +H   G    K ++F   K++A R+   +A+ YN   +HGD+SQ  R + L+ F+ G+
Sbjct:  237 PRVLVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAPKSEQARAAK-NASVIIGTPGRLLDLINDGSIDCSQVGYLVLDEADRMLDTGFEQDIRNIISHTPDPTRNGSRQTVFFSATWPESVRALAATFLKDPVKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEAARVEGTLARKYNVVGIHGDMSQGARLQALNDFKSGK 466          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP3_EMENI (ATP-dependent RNA helicase dbp3 OS=Emericella nidulans GN=dbp3 PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 81/227 (35.68%), Postives = 130/227 (57.27%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPSLD--TICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLP-QNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGD--SDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKG--GKCIVFTQTKRDADRLAHAM-AKSYNCEPLHGDISQSQRERTLSAFRDG 662
            PL +V++PTRELA Q+  +  + A  +D    C++GG     Q  AL      VV TPGR+ DL    +L+L  V+++VLDEAD+ML  GF +D++ I+  +P   RQ +MF+AT PP +R+L + ++ +P+TV + GD  +D +    I         +EK   + Q++  H +G   K + F   K++A R+   +  K +    +HGD+SQ +R R+L AF+ G
Sbjct:  147 PLAVVISPTRELAMQIYDQLVKFAEKVDIQVACIFGGVKKDEQREALKSAA-VVVATPGRLKDLQNDGSLDLGRVKYLVLDEADRMLDKGFEQDIKDIISPMPVSKRQTVMFTATWPPIVRNLASTFMTSPVTVTIGGDPSADPRANSRIKQVVEVVKPHEKEQRLVQILNRHQRGTPDKVLAFCLYKKEAMRVERLLRTKGFKVAGIHGDLSQQERFRSLEAFKSG 372          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DBP2_SCHPO (ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe GN=dbp2 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.039e-31
Identity = 83/225 (36.89%), Postives = 128/225 (56.89%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERLPQNRQGMMFSATMPPWIRSLTNKYLKNPLTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAK--GGKCIVFTQTKRDADRLAHAMAK-SYNCEPLHGDISQSQRERTLSAFRDGR 665
            P+ LVLAPTRELA Q+++E  +   S  +   CVYGG P   Q+R L  GV+  + TPGR++D++  N  NL  V ++VLDEAD+ML +GF   +  I++++  +RQ +MFSAT P  ++ L   YL + + V  VG  D   +  I          +K + +G+ I E  K    K ++FT TKR AD +   + +  +    +HGD +Q +R+  L+ FR G+
Sbjct:  196 PIVLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIATPGRLLDMLDSNKTNLRRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQV-TVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRDNKVLIFTGTKRVADDITRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGK 419          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 85/234 (36.32%), Postives = 134/234 (57.26%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESA--PSLDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVILERL----PQNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLI---TEHAKGGK---CIVFTQTKRDADRLAHAMA-KSYNCEPLHGDISQSQRERTLSAFRDG 662
            PL L+L+PTREL+ Q+ +E  + +    +  +  YGG PI+ Q+R L+ GVD +V TPGR++DL++R  ++L  ++++ LDEAD+ML +GF   V  I+E++    P  RQ M+FSAT P  I+ + + +L+N   L V  VG S   +   +     A    +K S +  L+    + A  GK    +VF +TKR AD L H +    +    +HGD +Q +RE  L +F+ G
Sbjct:  236 PLALILSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQRMASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEA----DKRSHLMDLLHAQRDSATPGKPTLTLVFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSG 465          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_NEOFI (ATP-dependent RNA helicase ded1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=ded1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 83/229 (36.24%), Postives = 130/229 (56.77%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  ++++VLDEAD+ML +GF   +  I+  E +P    RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +         ++K S++  ++  H   G  ++F +TKR AD L+   + + +    +HGD +Q +RER L  FR GR
Sbjct:  278 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLVLDEADRMLDMGFEPQIRRIVEGEDMPNVNERQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADALSDFLLNQRFPATAIHGDRTQRERERALEMFRSGR 502          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_ASPTN (ATP-dependent RNA helicase ded1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=ded1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 82/229 (35.81%), Postives = 131/229 (57.21%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  +++++LDEAD+ML +GF   +  I+  E +P   +RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +         ++K S++  ++  H   G  ++F +TKR AD L+   + + +    +HGD +Q +RER L  FR GR
Sbjct:  274 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGR 498          
BLAST of DY258881 vs. ExPASy Swiss-Prot
Match: DED1_ASPOR (ATP-dependent RNA helicase ded1 OS=Aspergillus oryzae GN=ded1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.357e-31
Identity = 82/229 (35.81%), Postives = 131/229 (57.21%), Query Frame = 3
Query:    6 PLCLVLAPTRELAKQVEKEFHESAPS--LDTICVYGGTPISHQMRALDYGVDAVVGTPGRVIDLIKRNALNLSEVQFVVLDEADQMLSVGFAEDVEVIL--ERLP--QNRQGMMFSATMPPWIRSLTNKYLKNP--LTVDLVGDSDQKLADGIPLYSIATSMYEKPSIIGQLITEHAKGGKCIVFTQTKRDADRLA-HAMAKSYNCEPLHGDISQSQRERTLSAFRDGR 665
            P  L+LAPTREL  Q+  E  + A    +    VYGG  I  Q+R ++ G D +V TPGR++DLI+R  ++L  +++++LDEAD+ML +GF   +  I+  E +P   +RQ +MFSAT P  I+ L   +LK+   L+V  VG + + +   +         ++K S++  ++  H   G  ++F +TKR AD L+   + + +    +HGD +Q +RER L  FR GR
Sbjct:  274 PTSLILAPTRELVSQIFDEARKFAYRSWVRPCVVYGGADIGSQLRQIERGCDLLVATPGRLVDLIERGRISLVNIKYLILDEADRMLDMGFEPQIRRIVEGEDMPHVNDRQTLMFSATFPRDIQMLARDFLKDYVFLSVGRVGSTSENITQKVEY----VEDHDKRSVLLDILHTHGTSGLTLIFVETKRMADSLSDFLLNQRFPATAIHGDRTQRERERALEMFRSGR 498          
The following BLAST results are available for this feature:
BLAST of DY258881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DED1_EMENI7.957e-3235.65ATP-dependent RNA helicase ded1 OS=Emericella nidu... [more]
DEAD_BUCBP7.957e-3235.84Cold-shock DEAD box protein A homolog OS=Buchnera ... [more]
DED1_GIBZE1.039e-3137.12ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]
DBP3_SCHPO1.039e-3133.77ATP-dependent RNA helicase dbp3 OS=Schizosaccharom... [more]
DBP3_EMENI1.039e-3135.68ATP-dependent RNA helicase dbp3 OS=Emericella nidu... [more]
DBP2_SCHPO1.039e-3136.89ATP-dependent RNA helicase dbp2 OS=Schizosaccharom... [more]
RH52C_ORYSJ1.357e-3136.32DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
DED1_NEOFI1.357e-3136.24ATP-dependent RNA helicase ded1 OS=Neosartorya fis... [more]
DED1_ASPTN1.357e-3135.81ATP-dependent RNA helicase ded1 OS=Aspergillus ter... [more]
DED1_ASPOR1.357e-3135.81ATP-dependent RNA helicase ded1 OS=Aspergillus ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE05FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258881 ID=DY258881; Name=DY258881; organism=Citrus clementina; type=EST; length=671bp
GGAATCCTCTGTGCTTGGTGTTGGCTCCGACAAGAGAACTTGCGAAGCAA
GTTGAGAAGGAATTCCATGAATCTGCACCCAGCTTGGATACCATTTGTGT
TTACGGGGGCACTCCAATTTCTCATCAAATGAGGGCTCTTGACTATGGTG
TTGATGCGGTTGTTGGGACACCCGGTCGTGTTATTGATTTGATTAAGCGC
AATGCTCTCAACTTATCGGAGGTTCAGTTTGTTGTTCTTGATGAAGCTGA
TCAGATGCTTAGTGTTGGCTTTGCTGAAGATGTTGAAGTCATCTTGGAAA
GGTTGCCACAAAATCGACAGGGTATGATGTTTTCTGCGACGATGCCTCCA
TGGATTAGGAGCCTCACAAATAAGTACCTCAAGAATCCATTAACGGTTGA
CCTTGTTGGAGATTCTGATCAAAAGCTAGCTGATGGAATTCCCCTCTATT
CCATTGCAACAAGCATGTATGAAAAACCATCAATTATTGGTCAGCTTATA
ACAGAACATGCAAAAGGTGGAAAATGCATTGTTTTCACTCAAACAAAACG
TGATGCAGACCGCTTGGCTCATGCTATGGCTAAAAGTTATAATTGTGAGC
CTTTGCATGGGGATATCTCACAAAGCCAGAGGGAGAGGACCCTTTCAGCT
TTCCGAGATGGACGTTTCAAT
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