DY258885

Overview
NameDY258885
Unique NameDY258885
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1168
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig514 contig Ccv1_Contig514:292..1459. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY258885 vs. ExPASy Swiss-Prot
Match: CLPB2_CHLTE (Probable chaperone protein clpB 2 OS=Chlorobium tepidum GN=clpB2 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.465e-15
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 2 
Query:    2 RYEIHHKLRYTDEALVSAAQLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRGQDFEKAGEL 259
            +YEIHH +R  D ALV+AA+LS +YI+DRFLPDKAIDLIDEA SR+RL     PEE   + +ELR++  E+ EA++ ++ E  G +
Sbjct:  359 KYEIHHGVRIKDAALVAAAELSNRYIADRFLPDKAIDLIDEACSRLRLEIDSEPEELDRINRELRRLEIER-EALK-RELEATGSV 442
The following BLAST results are available for this feature:
BLAST of DY258885 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 201
Match NameE-valueIdentityDescription
CLPB2_CHLTE1.465e-1553.49Probable chaperone protein clpB 2 OS=Chlorobium te... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DE10FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258885 ID=DY258885; Name=DY258885; organism=Citrus clementina; type=EST; length=1168bp
GCGATATGAAATTCACCACAAGCTTCGTTACACTGATGAAGCACTAGTTT
CTGCTGCTCAGTTGTCATACCAGTACATCAGTGACCGTTTTCTCCCTGAT
AAAGCTATTGATTTGATTGATGAAGCTGGTTCTCGGGTTCGTCTTCGTCA
TGCACAGCTCCCCGAGGAAGCTAGAGAGCTTGAAAAAGAGCTCAGGCAGA
TAACTAAGGAGAAGAATGAGGCTGTTCGTGGCCAAGACTTTGAAAAGGCT
GGAGAGTTACGTGATAGAGAAATGGACCTTAAGGCTCAGATATCTGCTCT
TGTCGATAAAGGCAAAGAGATGAGCAAGGCAGAGACTGAAGCAGGGGATG
TTGGTCCTGTTGTGACTGAAGTGGACATTCAACACATTGTCTCAGCTTGG
ACGGGCATTCCGGTTGAAAAAGTCTCGACTGATGAATCTGATCGCCTCCT
CAAGATGGAAGAGACCCTTCACAAGAGAGTTATTGGTCAGGACGAAGCTG
TCAAAGCTATTAGTCGTGCTATCCGGCGTGCACGTGTTGGACTCAAAAAC
CCCAATCGACCAATTGCTAGTTTCATCTTTTCTGGTCCAACTGGTGTCGG
GAAGTCTGAACTGGCCAAAGCACTGGCTGCCTATTACTTTGGCTCAGAGG
AGGCCATGATCAGGCTTGATATGAGTGAGTTCATGGAAAGACACACTGTT
TCCAAGCTCATTGGTTCACCACCTGGTTATGTTGGTTACACTGAGGGTGG
TCAGCTGACTGAGGCTGTTCGCCGTCGTCCTTATACTGTTGTACTCTTTG
ATGAGATTGAAAAGGCTCATCCTGATGTCTTTCACATGATGCTTTCAAAT
CTCGAGGATGGAAGATTGACAAACCGCAAGGGAAGAATTGTAGACTTTCA
GATTACTCCTTCAAATATGACATCAAATGTTGGAAGCAATGTAAATTGAA
AAAGGGAAGGACCCCCCCTTTGGTTTTGATTTTTGATTTATGAAAGAAGA
AAAAACGCCAATTACAACCAGGAATTAAAAATCCTGGGAAAACTGAAGAA
ATTTGAAACCCAGTACTTTCCAGGGCCGGGAATTTCTTTTAAAAAAAAAT
GGGAAAAAAAAAAATAAATTTTTTTTCCCCCAAAAACCCCTCCCCCCAAG
ACCCCTGGAGAAGGTGTA
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