DY258889

Overview
NameDY258889
Unique NameDY258889
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1243
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig903 contig Ccv1_Contig903:55..1297. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ2_MOUSE (Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.420e-17
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA L G  IVYK   D+  +V G   ENEL+L +VL   FD++  +LR NV+K+
Sbjct:   40 TIKAVFILDNDGRRLLAKYYDDTFPSVKEQMVFEKNVFNKT----SRTESEIAFLGGMTIVYKSSIDIFLYVVGSSSENELMLMSVLACLFDSLSHILRKNVEKR 140          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ2_HUMAN (Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 9.309e-16
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            +IK + +LD++G+R+  KYY + +P+   +  FEK VF KT    +RTE+EIA   G  IVYK   DL  +V G   ENEL+L +VL   F+++  +LR NV+K+
Sbjct:   45 TIKAVFILDNDGRRLLAKYYDDTFPSMKEQMVFEKNVFNKT----SRTESEIAFFGGMTIVYKNSIDLFLYVVGSSYENELMLMSVLTCLFESLNHMLRKNVEKR 145          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZ_CAEEL (Probable coatomer subunit zeta OS=Caenorhabditis elegans GN=F59E10.3 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.709e-15
Identity = 46/106 (43.40%), Postives = 67/106 (63.21%), Query Frame = 2
Query:   77 SIKNILLLDSEGKRVAVKYYSND-WPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAVGLLLRGNVDKK 391
            SIK I++LD +G RV  KYY    + T   ++AFEK++F+KT +    T A+I +L+G   +Y+   DL+F+V G   ENEL L   L   +DAV ++LR NV+KK
Sbjct:   13 SIKGIVILDQDGNRVLAKYYDRTTFGTVKEQKAFEKSLFSKTSRN---TSADILLLDGVTCLYRSNVDLYFYVLGSTRENELFLDATLTCLYDAVSVVLRKNVEKK 115          
BLAST of DY258889 vs. ExPASy Swiss-Prot
Match: COPZA_DICDI (Probable coatomer subunit zeta-A OS=Dictyostelium discoideum GN=copza PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.065e-11
Identity = 39/107 (36.45%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   77 SIKNILLLDS-EGKRVAVKYYSNDWPTNSAKEAFEKAVFTKTQKTNARTEAEIAMLEGNVIVYKFVQDLHFFVTGGEDENELILATVLQGFFDAV-GLLLRGNVDKK 391
            ++ +  +LDS +G+RV  KYY+ND+ T   ++AFEK VF KT K N     EI +L+  ++VYK   ++  ++ G +++NE+ L  VL  F D +  L     ++KK
Sbjct:    7 TVTSFFILDSSKGERVIAKYYNNDFDTLQKQKAFEKKVFDKTSKVN--FGGEITLLDNYLVVYKSFSNIIIYMVGDQNQNEIALLYVLNSFIDTLQNLFENSQINKK 111          
The following BLAST results are available for this feature:
BLAST of DY258889 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
COPZ2_MOUSE8.420e-1743.81Coatomer subunit zeta-2 OS=Mus musculus GN=Copz2 P... [more]
COPZ2_HUMAN9.309e-1642.86Coatomer subunit zeta-2 OS=Homo sapiens GN=COPZ2 P... [more]
COPZ_CAEEL2.709e-1543.40Probable coatomer subunit zeta OS=Caenorhabditis e... [more]
COPZA_DICDI1.065e-1136.45Probable coatomer subunit zeta-A OS=Dictyostelium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DF06FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258889 ID=DY258889; Name=DY258889; organism=Citrus clementina; type=EST; length=1243bp
GGGAGTCTCAACGCTCGAAATTAATTGACTGCAGACGACCAGGTTTAATC
GAACGACAAGCATGGATACTTGTCCGTCCATAAAGAATATCCTTCTCCTG
GATTCTGAAGGGAAACGTGTAGCAGTCAAGTATTATTCAAATGACTGGCC
AACCAATAGTGCAAAGGAAGCTTTTGAGAAAGCTGTGTTTACCAAGACCC
AGAAAACAAATGCACGGACCGAAGCGGAGATAGCTATGCTTGAGGGCAAC
GTTATTGTTTACAAGTTTGTTCAAGACCTTCACTTTTTTGTCACTGGTGG
TGAAGATGAAAATGAGCTGATCTTAGCCACAGTTCTTCAGGGATTTTTTG
ATGCAGTTGGTCTTCTTCTTAGAGGCAATGTGGACAAGAAGGAGGCTCTT
GAGAACTTGGATCTTATCTTGTTGTGCCTTGATGAATTGTTGATGGAGGG
TATGCAACGTGCTACTCGTTTATATTGTTAATCAACTTTGACTGCTGAAC
TTATCCAAAGTTGCCTCTGATCTGATATGATTTGCCGAGATTTAAAACAT
GGAAAGATTGCATCCCTTGGATTCCAAGTTTGTAAAAGTCTATTGTGCTG
AAAACATTCAATTGCTTGTAACTAAAAAGCACATACATGGCAAACAACTT
GTGGAGGATCAGTATGAGTTAGGCATTGTTATTTGAAACTGCCTATTGAC
ATCTTTATCTTTAGGATTCTTGGGAAAATTCAATTGGTCTTGTTAGGTTA
TTATTATATCCTTCCGATCCCCAAATCCCCTTGGAGGTTGTTAGCACACT
GGCGTAATGGTTGGATGGGCTGGGCCATAACATTCCGAAAACTGATGCAA
ATGTCTTTGCTGGAAAGGGTCCAGCCCAAATTGTGGAAGTTGGAACCTCC
TTTGCTGAAAAAAAAATTTACCCAGCCTTGGCTTACTGCCCCGGAAAATT
TAAACAGAATCCCCTCTTTAGGTAGGATTGCACCCAAAAAAAGGGGGAAA
AGCAAGAGTTCTTTGATTTTTTCTCCGTTTTTTACCAATAAAGGGAATTT
CCCGGGTAAGGGAGACCTCCCCCCAATTTTGGCTTTTCTTTTATTATTTA
TAAAAAAAGGAAACCCTCCCATTTTTTTTGGCTTGGCAAAAAAAAGTTTT
GTCTCCCCACTTCGGGGGGGGGGGTTTCGTCGGGGCCCGCCTTTCTTTTC
CCCAAATTTTTTTGCCAAAAAAAATTATTTTTAAATTTTTTGG
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