DY258903

Overview
NameDY258903
Unique NameDY258903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_SOLLC (Probable phospholipid hydroperoxide glutathione peroxidase OS=Solanum lycopersicum GN=GPXle-1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.037e-46
Identity = 82/118 (69.49%), Postives = 98/118 (83.05%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            +S+YDFTVKD  GKDV LS +KGKVL+IVNVAS+CGLT SNY++++ LY+KYK QG EILAFPCNQFGGQEPG+  +I++  CTRFKAE+PIFDKVDVNG N AP+Y  LKS   G F
Sbjct:    9 QSVYDFTVKDAKGKDVDLSIYKGKVLIIVNVASQCGLTNSNYTDMTELYKKYKDQGLEILAFPCNQFGGQEPGNIEDIQQMVCTRFKAEYPIFDKVDVNGDNAAPLYRFLKSSKGGFF 126          

HSP 2 Score: 33.113 bits (74), Expect = 3.037e-46
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            S GG  GD +KWNF KFL  ++     R SP   P
Sbjct:  121 SKGGFFGDGIKWNFSKFLIDKEGHVVDRYSPTTSP 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_GOSHI (Probable phospholipid hydroperoxide glutathione peroxidase OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.294e-45
Identity = 83/119 (69.75%), Postives = 96/119 (80.67%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-IKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNF 635
            +S+YDFTVKD  G DV LS +KGKVL+IVNVAS+CGLT SNY++L+ +Y+KYK QG EILAFPCNQFGGQEPGS  E I+   CTRFKAE+PIFDKVDVNG N AP+Y  LKS   G F
Sbjct:    9 QSIYDFTVKDAKGNDVDLSIYKGKVLIIVNVASQCGLTNSNYTDLTEIYKKYKDQGLEILAFPCNQFGGQEPGSIEESIQNMVCTRFKAEYPIFDKVDVNGDNAAPLYKFLKSSKGGFF 127          

HSP 2 Score: 34.6538 bits (78), Expect = 3.294e-45
Identity = 16/35 (45.71%), Postives = 19/35 (54.29%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            S GG  GD +KWNF KFL  ++     R SP   P
Sbjct:  122 SKGGFFGDSIKWNFSKFLVDKEGNVVDRYSPTTTP 156          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 5.585e-45
Identity = 79/111 (71.17%), Postives = 91/111 (81.98%), Query Frame = 3
Query:  297 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            F+ KD+ G+DV LSK+KGKVLLIVNVAS+CG T SNY EL+ LY+KYK QGFEILAFPCNQFGGQEPGSN EI+ FACTRFKAE+P+F KV+VNG    P+Y  LKS   G
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGG 135          

HSP 2 Score: 37.7354 bits (86), Expect = 5.585e-45
Identity = 18/36 (50.00%), Postives = 22/36 (61.11%), Query Frame = 1
Query:  619 SAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            S GG LGD +KWNF KFL  ++ K   R +P   PL
Sbjct:  132 SKGGFLGDSIKWNFTKFLVDREGKVVDRYAPTTSPL 167          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.228e-43
Identity = 97/167 (58.08%), Postives = 114/167 (68.26%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKW--TK--MEKSSK---RIPPLPPPSKLRRTTRNLGG 761
            KS++DF VKD  G DV LS +KGKVLLIVNVAS+CGLT SNY EL+ LYE+YK +G EILAFPCNQFG QEPG N +I EFACTRFKAEFPIFDKVDVNG N APVY  LKS   G F         + +KW  TK  +++  K   R  P   P+ + +  + L G
Sbjct:   10 KSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLFG--------DGIKWNFTKFLVDRDGKVVDRYAPTTSPASIEKDIKKLIG 168          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_SPIOL (Probable phospholipid hydroperoxide glutathione peroxidase OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.604e-43
Identity = 96/175 (54.86%), Postives = 117/175 (66.86%), Query Frame = 3
Query:  258 AHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKW--TK--MEKSSK---RIPPLPPPSKLRRTTRNLGG 761
            A  ++A  KS+++F V+D  G DV LS +KGKVLLIVNVAS+CGLT SNY+E++ LYEKY+  G EILAFPCNQFG QEPGSN E+ EFACTRFKAE+PIFDKVDVNG N AP+Y  LKS   G F         + LKW  TK  ++K      R  P   P  + +  + L G
Sbjct:    2 ASDSSAQPKSVHEFVVRDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYTEMTELYEKYRELGLEILAFPCNQFGNQEPGSNEEVLEFACTRFKAEYPIFDKVDVNGSNAAPIYKFLKSSKGGLFG--------DGLKWNFTKFLVDKDGNVVDRYAPTTSPKSIEKDVKKLLG 168          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 7.714e-43
Identity = 76/119 (63.87%), Postives = 96/119 (80.67%), Query Frame = 3
Query:  264 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSK 620
            +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY  LKSK
Sbjct:    6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSK 124          

HSP 2 Score: 26.9498 bits (58), Expect = 7.714e-43
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  634 LGDLVKWNFEKFLSGQ 681
            LG  +KWNF KFL G+
Sbjct:  129 LGSRIKWNFTKFLVGK 144          

HSP 3 Score: 24.6386 bits (52), Expect = 7.714e-43
Identity = 11/26 (42.31%), Postives = 16/26 (61.54%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKDNQK 751
            V K+G+VI+      SP  I+KD +K
Sbjct:  142 VGKDGQVIDRYGTTVSPLSIQKDIEK 167          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.647e-39
Identity = 72/118 (61.02%), Postives = 92/118 (77.97%), Query Frame = 3
Query:  264 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKS 617
            + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y  LK+
Sbjct:    4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKA 121          

HSP 2 Score: 26.9498 bits (58), Expect = 2.647e-39
Identity = 10/16 (62.50%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  634 LGDLVKWNFEKFLSGQ 681
            LG  +KWNF KFL G+
Sbjct:  127 LGSRIKWNFTKFLVGK 142          

HSP 3 Score: 22.7126 bits (47), Expect = 2.647e-39
Identity = 11/26 (42.31%), Postives = 15/26 (57.69%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKDNQK 751
            V K+G VI+      +P  IEKD +K
Sbjct:  140 VGKDGLVIDRYGTMVTPLSIEKDIKK 165          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 6.973e-39
Identity = 78/158 (49.37%), Postives = 109/158 (68.99%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWTKMEKSSKRIPPLPPPSKLRRTTRNL 755
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y  LK   WG F    Q    + L   K  ++ +R  P   P  L    +NL
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIFGDDIQWNFAKFLV-DKNGQAVQRYYPTTSPLTLEHDIKNL 163          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.607e-34
Identity = 63/115 (54.78%), Postives = 81/115 (70.43%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y  LK +  G
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGG 117          

HSP 2 Score: 33.4982 bits (75), Expect = 1.607e-34
Identity = 16/33 (48.48%), Postives = 19/33 (57.58%), Query Frame = 1
Query:  625 GGILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            GG L D +KWNF KFL G+     +R SP   P
Sbjct:  116 GGFLVDAIKWNFTKFLVGRDGHVIKRFSPTTEP 148          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.469e-30
Identity = 70/167 (41.92%), Postives = 97/167 (58.08%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNLGGE 764
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P++  LK++  G         + + +KW        +  K  KR  P   P  + +  +   GE
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGG--------FMFDAIKWNFTKFLVGRDGKIIKRFGPTTDPKDMEKDIKEALGE 161          
The following BLAST results are available for this feature:
BLAST of DY258903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX4_SOLLC3.037e-4669.49Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_GOSHI3.294e-4569.75Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_HELAN5.585e-4571.17Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_MESCR1.228e-4358.08Probable phospholipid hydroperoxide glutathione pe... [more]
GPX4_SPIOL1.604e-4354.86Probable phospholipid hydroperoxide glutathione pe... [more]
GPX5_ARATH7.714e-4363.87Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX4_ARATH2.647e-3961.02Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX8_ARATH6.973e-3949.37Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX2_CAEEL1.607e-3454.78Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL3.469e-3041.92Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258903 ID=DY258903; Name=DY258903; organism=Citrus clementina; type=EST; length=947bp
GATTGCAACGCCTCTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTC
GAAGGATAACTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATG
CCCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCACTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAA
GTGGAACTTTGAGAAGTTCTTAAGTGGACAAAAATGGAAAAGTCATCGAA
GAGAATCCCCCCCCTACCTCCCCCTTCCAAATTGAGAAGGACAACCAGAA
ACCTTGGTGGGGAATGAAACCTGACTTGACCTGCTTGGCCAAGTCTCAAA
TGTATCCACCAAAAAAAAACCAAAAAAAAGTATATGTATATTTCTGAATC
CCGCATCACCTAAAAGGAATTTTTCCCCGGCCCCCCCCGAAATGGTGAAA
GGTTTTTAAACCCCAAAAAATACAAAAATTGGAACAAATTTCCTTGC
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