DY258903

Overview
NameDY258903
Unique NameDY258903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_SCHPO (Glutathione peroxidase OS=Schizosaccharomyces pombe GN=gpx1 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.968e-29
Identity = 60/110 (54.55%), Postives = 72/110 (65.45%), Query Frame = 3
Query:  291 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSK 620
            YD   KD DG   P S  KGKV+L+VN AS+CG TP  Y  L  LY+KYK +GF IL FPCNQFG QEPGS+ EI +F    +   FP+  K++VNG N  PVY  LKS+
Sbjct:    5 YDLAPKDKDGNPFPFSNLKGKVVLVVNTASKCGFTPQ-YKGLEALYQKYKDRGFIILGFPCNQFGNQEPGSDEEIAQFCQKNYGVTFPVLAKINVNGDNVDPVYQFLKSQ 113          

HSP 2 Score: 24.6386 bits (52), Expect = 3.968e-29
Identity = 10/21 (47.62%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRES 708
            +KWNFEKFL  ++ +   R S
Sbjct:  122 IKWNFEKFLVNRQGQVIERYS 142          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX2_YEAST (Glutathione peroxidase 2 OS=Saccharomyces cerevisiae GN=GPX2 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.715e-29
Identity = 61/112 (54.46%), Postives = 74/112 (66.07%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSK 620
            S YD   KD  G+     + KGKV+LIVNVAS+CG TP  Y EL  LY+KY+ +GF IL FPCNQFG QEPGS+ +I EF    +   FPI  K+DVNG N   VY+ LKS+
Sbjct:    4 SFYDLECKDKKGESFKFDQLKGKVVLIVNVASKCGFTPQ-YKELEELYKKYQDKGFVILGFPCNQFGKQEPGSDEQITEFCQLNYGVTFPIMKKIDVNGSNADSVYNYLKSQ 114          

HSP 2 Score: 25.7942 bits (55), Expect = 6.715e-29
Identity = 15/35 (42.86%), Postives = 18/35 (51.43%), Query Frame = 1
Query:  607 Y*SPSAGGILGDL-VKWNFEKFLSGQKWKSHRRES 708
            Y      G+LG   +KWNFEKFL     K  +R S
Sbjct:  110 YLKSQKAGLLGFKGIKWNFEKFLVDSNGKVVQRFS 144          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPO_SYNY3 (Putative glutathione peroxidase OS=Synechocystis sp. (strain PCC 6803) GN=slr1171 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.137e-28
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 3
Query:  267 TAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL 611
            TA    ++Y F+   +DG  V L  F+GKVLLIVN AS+CG TP  Y  L  LY ++  +GF +L FPCNQFG QEPG + EIK F  TR+   FP+F+KV+VNGPN  P++  L
Sbjct:    2 TAQANNTIYGFSANALDGSPVALRDFEGKVLLIVNTASQCGFTPQ-YQGLQALYNRFGDRGFTVLGFPCNQFGQQEPGGSGEIKNFCETRYGVTFPLFEKVEVNGPNAHPLFKFL 115          

HSP 2 Score: 23.8682 bits (50), Expect = 1.137e-28
Identity = 12/29 (41.38%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  616 PSAGGILGDLVKWNFEKFLSGQKWKSHRR 702
            P  GG   + +KWNF KFL  ++ K  +R
Sbjct:  125 PFLGG--AEDIKWNFTKFLVDRQGKVVKR 151          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_SCHMA (Glutathione peroxidase OS=Schistosoma mansoni GN=GPX1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.480e-28
Identity = 56/115 (48.70%), Postives = 77/115 (66.96%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            S+Y+FTVKDI+G DV L K++G V LIVNVA + G T  NY +L  ++ +   +G  ILAFPCNQFGGQEP +  EIK+F   ++  +F +F K+ VNG +   +Y  LKS+  G
Sbjct:   10 SIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKUGATDKNYRQLQEMHTRLVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQHG 124          

HSP 2 Score: 29.261 bits (64), Expect = 1.480e-28
Identity = 13/32 (40.62%), Postives = 19/32 (59.38%), Query Frame = 1
Query:  628 GILGDLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            G L + +KWNF KFL  ++ +  +R SP   P
Sbjct:  124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAP 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMF (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=gpxA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.503e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  288 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKS 617
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y  LKS
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKS 111          

HSP 2 Score: 24.2534 bits (51), Expect = 2.503e-28
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRESPPYLP 723
            +KWNF KFL  +  +   R +P   P
Sbjct:  141 IKWNFTKFLVNRDGEVVERFAPSVTP 166          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMC (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup C GN=gpxA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.503e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  288 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKS 617
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y  LKS
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKS 111          

HSP 2 Score: 24.2534 bits (51), Expect = 2.503e-28
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRESPPYLP 723
            +KWNF KFL  +  +   R +P   P
Sbjct:  141 IKWNFTKFLVNRDGEVVERFAPSVTP 166          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMB (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup B GN=gpxA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.503e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  288 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKS 617
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y  LKS
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKS 111          

HSP 2 Score: 24.2534 bits (51), Expect = 2.503e-28
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRESPPYLP 723
            +KWNF KFL  +  +   R +P   P
Sbjct:  141 IKWNFTKFLVNRDGEVVERFAPSVTP 166          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPXA_NEIMA (Glutathione peroxidase homolog OS=Neisseria meningitidis serogroup A GN=gpxA PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 2.503e-28
Identity = 61/110 (55.45%), Postives = 76/110 (69.09%), Query Frame = 3
Query:  288 LYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKS 617
            +YDF +KD +G  V LS ++GKVLLIVN A+RCGLTP  Y  L  LY +Y  +G EIL FPCNQF  Q P S+ EI +    +F  +F IFDK++VNG NTAP+Y  LKS
Sbjct:    3 IYDFQMKDAEGNAVDLSGYRGKVLLIVNTATRCGLTPQ-YEALQKLYAQYTAEGLEILDFPCNQFREQAPESSGEIAQVCMMKFGTKFKIFDKIEVNGANTAPLYAYLKS 111          

HSP 2 Score: 24.2534 bits (51), Expect = 2.503e-28
Identity = 10/26 (38.46%), Postives = 14/26 (53.85%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRESPPYLP 723
            +KWNF KFL  +  +   R +P   P
Sbjct:  141 IKWNFTKFLVNRDGEVVERFAPSVTP 166          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_CALJA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Callithrix jacchus GN=GPX4 PE=2 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 6.133e-28
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLK 614
            +S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P++  +K
Sbjct:   39 RSMHEFSAKDIDGHTVNLDKYRGFVCIVTNVASQUGKTQVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMK 148          

HSP 2 Score: 29.6462 bits (65), Expect = 6.133e-28
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 1
Query:  616 PSAGGILGDLVKWNFEKFL 672
            P   G LG+ +KWNF KFL
Sbjct:  151 PKGKGTLGNAIKWNFTKFL 169          

HSP 3 Score: 25.409 bits (54), Expect = 6.133e-28
Identity = 12/23 (52.17%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKD 742
            VDKNG V++   P   P  IEKD
Sbjct:  170 VDKNGCVVKRYGPMEEPQVIEKD 192          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_CEBAP (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Cebus apella GN=GPX4 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 6.133e-28
Identity = 54/110 (49.09%), Postives = 75/110 (68.18%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLK 614
            S+++F+ KDIDG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G  ILAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P++  +K
Sbjct:   40 SMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRILAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMK 148          

HSP 2 Score: 31.5722 bits (70), Expect = 6.133e-28
Identity = 12/19 (63.16%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  616 PSAGGILGDLVKWNFEKFL 672
            P   GILG+ +KWNF KFL
Sbjct:  151 PKGKGILGNAIKWNFTKFL 169          

HSP 3 Score: 25.0238 bits (53), Expect = 6.133e-28
Identity = 11/23 (47.83%), Postives = 14/23 (60.87%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKD 742
            +DKNG V++   P   P  IEKD
Sbjct:  170 IDKNGCVVKRYGPMEEPQVIEKD 192          
The following BLAST results are available for this feature:
BLAST of DY258903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_SCHPO3.968e-2954.55Glutathione peroxidase OS=Schizosaccharomyces pomb... [more]
GPX2_YEAST6.715e-2954.46Glutathione peroxidase 2 OS=Saccharomyces cerevisi... [more]
GPO_SYNY31.137e-2851.30Putative glutathione peroxidase OS=Synechocystis s... [more]
GPX1_SCHMA1.480e-2848.70Glutathione peroxidase OS=Schistosoma mansoni GN=G... [more]
GPXA_NEIMF2.503e-2855.45Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMC2.503e-2855.45Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMB2.503e-2855.45Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPXA_NEIMA2.503e-2855.45Glutathione peroxidase homolog OS=Neisseria mening... [more]
GPX4_CALJA6.133e-2848.65Phospholipid hydroperoxide glutathione peroxidase,... [more]
GPX4_CEBAP6.133e-2849.09Phospholipid hydroperoxide glutathione peroxidase,... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258903 ID=DY258903; Name=DY258903; organism=Citrus clementina; type=EST; length=947bp
GATTGCAACGCCTCTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTC
GAAGGATAACTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATG
CCCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCACTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAA
GTGGAACTTTGAGAAGTTCTTAAGTGGACAAAAATGGAAAAGTCATCGAA
GAGAATCCCCCCCCTACCTCCCCCTTCCAAATTGAGAAGGACAACCAGAA
ACCTTGGTGGGGAATGAAACCTGACTTGACCTGCTTGGCCAAGTCTCAAA
TGTATCCACCAAAAAAAAACCAAAAAAAAGTATATGTATATTTCTGAATC
CCGCATCACCTAAAAGGAATTTTTCCCCGGCCCCCCCCGAAATGGTGAAA
GGTTTTTAAACCCCAAAAAATACAAAAATTGGAACAAATTTCCTTGC
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