DY258903

Overview
NameDY258903
Unique NameDY258903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BTUE_ECOLI (Vitamin B12 transport periplasmic protein btuE OS=Escherichia coli (strain K12) GN=btuE PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.702e-26
Identity = 55/111 (49.55%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  279 EKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL 611
            + S+    VKDIDG+   L KF G VLLIVNVAS+CGLTP  Y +L ++ + +  +GF +L FPCNQF  QEPGS+ EIK +  T +   FP+F K++VNG    P+Y  L
Sbjct:    2 QDSILTTVVKDIDGEVTTLEKFAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWVDRGFMVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGEGRHPLYQKL 111          

HSP 2 Score: 30.0314 bits (66), Expect = 1.702e-26
Identity = 14/28 (50.00%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  640 DLVKWNFEKFLSGQKWKSHRRESPPYLP 723
            D + WNFEKFL G+  K  +R SP   P
Sbjct:  141 DDILWNFEKFLVGRDGKVIQRFSPDMTP 168          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_BACSU (Glutathione peroxidase homolog bsaA OS=Bacillus subtilis GN=bsaA PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.712e-26
Identity = 57/115 (49.57%), Postives = 72/115 (62.61%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            S+Y   V+ I GKD+ L  F GKVL+IVN AS+CG T S   +L  LY+ Y+ +G EIL FPCNQF  QEPG   +I+EF  T +   FP+F KVDVNG N  P++  L     G
Sbjct:    2 SIYHMKVRTITGKDMTLQPFAGKVLMIVNTASKCGFT-SQLKQLQELYDTYQQEGLEILGFPCNQFMNQEPGEEADIQEFCETNYGVTFPMFSKVDVNGKNAHPLFVYLTEHAKG 115          

HSP 2 Score: 25.7942 bits (55), Expect = 1.712e-26
Identity = 9/23 (39.13%), Postives = 16/23 (69.57%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKD 742
            VD+NG+++    P T+P ++E D
Sbjct:  131 VDRNGEIVGRYSPNTNPKELEDD 153          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPO_LACLM (Glutathione peroxidase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gpo PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 3.781e-26
Identity = 53/115 (46.09%), Postives = 71/115 (61.74%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            + YDF+   ++G+ V +S +KGKV+++VN AS+CG TP  +  L  LYE YK QG EIL FPCNQF  Q+ G N EI EF    +   F +F K+ VNG    P+Y  LK +  G
Sbjct:    2 NFYDFSAVKMNGETVSMSDYKGKVVIVVNTASKCGFTPQ-FEGLEKLYETYKDQGLEILGFPCNQFANQDAGENTEINEFCQLNYGVTFTMFQKIKVNGKEAHPLYQFLKKEAKG 115          

HSP 2 Score: 26.5646 bits (57), Expect = 3.781e-26
Identity = 10/26 (38.46%), Postives = 19/26 (73.08%), Query Frame = 2
Query:  674 VDKNGKVIEENPPPTSPFQIEKDNQK 751
            +D++G+VIE   P T P ++E++ +K
Sbjct:  130 IDRDGQVIERFAPKTEPEEMEEEIKK 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX4_HYLLA (Phospholipid hydroperoxide glutathione peroxidase, mitochondrial OS=Hylobates lar GN=GPX4 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.822e-25
Identity = 51/110 (46.36%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLK 614
            S+++F+ K +DG  V L K++G V ++ NVAS+ G T  NY++L  L+ +Y   G   LAFPCNQFG QEPGSN EIKEFA   +  +F +F K+ VNG +  P++  +K
Sbjct:   40 SMHEFSAKVLDGHTVNLDKYRGFVCIVTNVASQUGKTEVNYTQLVDLHARYAECGLRFLAFPCNQFGKQEPGSNEEIKEFA-AGYNVKFDMFSKICVNGDDAHPLWKWMK 148          

HSP 2 Score: 33.113 bits (74), Expect = 1.822e-25
Identity = 16/37 (43.24%), Postives = 20/37 (54.05%), Query Frame = 1
Query:  616 PSAGGILGDLVKWNFEKFLSGQKWKSHRRESPPYLPL 726
            P   GILG+ +KWNF KFL  +     +R  P   PL
Sbjct:  151 PKGKGILGNAIKWNFTKFLFDKNGCVVKRYGPMEEPL 187          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_BACHD (Glutathione peroxidase homolog bsaA OS=Bacillus halodurans GN=bsaA PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.388e-25
Identity = 69/158 (43.67%), Postives = 93/158 (58.86%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKW--TK--MEKSS---KRIPPLPPPSKLR 737
            S+++F+ + I+G++  LS +K +VLLIVN AS+CGLTP  Y EL  LYE YK QGF +L FP NQF  QEPG + EI  F    +   FPIF+KV VNG    P++  L S+  G F         E +KW  TK  +++S    KR  P   P K++
Sbjct:    2 SIHEFSARLINGEEKALSDYKDQVLLIVNTASKCGLTPQ-YEELQILYETYKDQGFTVLGFPSNQFMNQEPGDHNEIAAFCERNYGVSFPIFEKVKVNGKEAHPLFQYLTSQQGGLFT--------EKIKWNFTKFLIDRSGNVVKRYAPSTSPIKIK 150          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_STAES (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 12228) GN=bsaA PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 5.731e-25
Identity = 64/165 (38.79%), Postives = 86/165 (52.12%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            +S+YDF V+  +G+   L ++KG V+LIVN AS CG TP  +  L  LY++YK Q F IL FPCNQFGGQEPGS  E  +     +   FPI +KVDV G N  P++H L +   G           E +KW        +     KR  P   P +++     L
Sbjct:    2 ESIYDFVVQKNNGESYKLEQYKGDVMLIVNTASECGFTPQ-FEGLQKLYDEYKDQRFIILGFPCNQFGGQEPGSGEEAAQNCKINYGVTFPIHEKVDVKGDNQHPLFHFLTNAAKGMIN--------EKIKWNFTKFLIDREGNVIKRFSPQKKPEQIKTEIEKL 157          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_CHLRE (Glutathione peroxidase 1, mitochondrial OS=Chlamydomonas reinhardtii GN=GPX PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 8.275e-24
Identity = 59/122 (48.36%), Postives = 77/122 (63.11%), Query Frame = 3
Query:  255 GAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR--FKAEFPIFDKVDVNGPNTAPVYHLLK 614
            G+  T++T  + +  +  DID K+V       +V+L+VNVAS+ GLT +NY E + L  KY      I+AFPCNQFGGQEPG+N EIK FA  R    A   + DKVDVNG N +PVY+ LK
Sbjct:   33 GSKPTSSTS-NFHQLSALDIDKKNVDFKSLNNRVVLVVNVASKUGLTAANYKEFATLLGKYPATDLTIVAFPCNQFGGQEPGTNAEIKAFASARGFSGAGALLMDKVDVNGANASPVYNFLK 153          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_STAAW (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MW2) GN=bsaA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.411e-23
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++  L +   G F         E +KW        +     KR  P   P ++ R    L
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKL 157          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_STAAS (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MSSA476) GN=bsaA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.411e-23
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++  L +   G F         E +KW        +     KR  P   P ++ R    L
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKL 157          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.411e-23
Identity = 64/165 (38.79%), Postives = 83/165 (50.30%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P++  L +   G F         E +KW        +     KR  P   P ++ R    L
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKWNFTKFLVDREGNVVKRFAPQKKPVQIEREIEKL 157          
The following BLAST results are available for this feature:
BLAST of DY258903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
BTUE_ECOLI1.702e-2649.55Vitamin B12 transport periplasmic protein btuE OS=... [more]
BSAA_BACSU1.712e-2649.57Glutathione peroxidase homolog bsaA OS=Bacillus su... [more]
GPO_LACLM3.781e-2646.09Glutathione peroxidase OS=Lactococcus lactis subsp... [more]
GPX4_HYLLA1.822e-2546.36Phospholipid hydroperoxide glutathione peroxidase,... [more]
BSAA_BACHD4.388e-2543.67Glutathione peroxidase homolog bsaA OS=Bacillus ha... [more]
BSAA_STAES5.731e-2538.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX1_CHLRE8.275e-2448.36Glutathione peroxidase 1, mitochondrial OS=Chlamyd... [more]
BSAA_STAAW1.411e-2338.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAS1.411e-2338.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAR1.411e-2338.79Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258903 ID=DY258903; Name=DY258903; organism=Citrus clementina; type=EST; length=947bp
GATTGCAACGCCTCTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTC
GAAGGATAACTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATG
CCCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCACTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAA
GTGGAACTTTGAGAAGTTCTTAAGTGGACAAAAATGGAAAAGTCATCGAA
GAGAATCCCCCCCCTACCTCCCCCTTCCAAATTGAGAAGGACAACCAGAA
ACCTTGGTGGGGAATGAAACCTGACTTGACCTGCTTGGCCAAGTCTCAAA
TGTATCCACCAAAAAAAAACCAAAAAAAAGTATATGTATATTTCTGAATC
CCGCATCACCTAAAAGGAATTTTTCCCCGGCCCCCCCCGAAATGGTGAAA
GGTTTTTAAACCCCAAAAAATACAAAAATTGGAACAAATTTCCTTGC
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