DY258903

Overview
NameDY258903
Unique NameDY258903
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length947
Libraries
Library NameType
AbsDev1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.321e-21
Identity = 55/146 (37.67%), Postives = 81/146 (55.48%), Query Frame = 3
Query:  291 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL-----KSKCWGNFRRPCQVEL*EVLKWTKMEKSSKRIPP 713
            Y + V D  G+ V LSK++GK  L+VNVAS C  T +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI+  A   +   FP+F K+ + G    P Y  L     K   W NF +       +V+K+ + +++++ I P
Sbjct:   48 YSYEVTDAKGRTVALSKYRGKASLVVNVASGCPHTEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFLVDSTKKEPRW-NFWKYLVDPQGQVVKYWRPDETAESIRP 192          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.725e-21
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWG 629
            +  Y F+  D +G   P +  + KV+LIVNVAS C  TP  Y EL +LYEKYK+ G  I+AFPC QFG QE   + EI +F   ++   FPI  K+  NG    PVY  LK+   G
Sbjct:    2 QEFYSFSPIDENGNPFPFNSLRNKVVLIVNVASHCAFTPQ-YKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSG 116          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.020e-21
Identity = 61/164 (37.20%), Postives = 85/164 (51.83%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLLKSKCWGNFRRPCQVEL*EVLKWT-------KMEKSSKRIPPLPPPSKLRRTTRNL 755
            S+YD  V++ DG    L ++KGKVL+IVN A+ C L    +++L  LY+KY   G EIL+FPCN F  QEPG   +I      +F   FPI  K++VNG +  P+Y LLK K  G F           +KW        +     KR  P   P+++ +  R L
Sbjct:    2 SIYDIAVENYDGSTYLLKRYKGKVLIIVNTATNCTLN-DQFNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLFG--------SQIKWNFTKFVVDQQGNIVKRFLPCDNPNQMEKLIRQL 156          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.492e-20
Identity = 54/146 (36.99%), Postives = 79/146 (54.11%), Query Frame = 3
Query:  291 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL-----KSKCWGNFRRPCQVEL*EVLKWTKMEKSSKRIPP 713
            Y + V D  G+ V LSK++GK  L+VNVAS C    +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI   A   +   FP+F K+ + G    P Y  L     K   W NF +       +V+K+ + +++++ I P
Sbjct:   48 YSYEVTDAKGRAVALSKYRGKASLVVNVASGCPHAEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFLVDSTKKEPRW-NFWKYLVDPQGQVVKYWRPDETAESIRP 192          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.237e-19
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL 611
            K  Y + VKD  G+ V L K++GKV L+VNVAS   LT  +Y  L  L+ +  T  F +LAFPC+Q+G  E G++ EI+ FA + +   FPIF+K+ + G    P +  L
Sbjct:   46 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFL 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.613e-19
Identity = 45/114 (39.47%), Postives = 65/114 (57.02%), Query Frame = 3
Query:  282 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVY-HLLKSK 620
            ++ Y  + +  DG +V L  F+G V++I NVAS C    SNY   + L +K+  +G  IL FPCNQ+ GQE     EI+     ++   F +FDKVDV G    PV+ HL+ +K
Sbjct:    8 EAFYGLSARGWDGSEVSLGSFRGCVIMIANVASSCKFAESNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHLVNTK 121          

HSP 2 Score: 28.8758 bits (63), Expect = 1.613e-19
Identity = 13/28 (46.43%), Postives = 17/28 (60.71%), Query Frame = 1
Query:  628 GILGDLVKWNFEKFLSGQKWKSHRRESP 711
            G LG+ +KWNF KFL  +K    +R  P
Sbjct:  125 GRLGNFIKWNFTKFLVDRKGCVVKRFGP 152          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 4.573e-19
Identity = 48/124 (38.71%), Postives = 74/124 (59.68%), Query Frame = 3
Query:  276 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK--------AEFPIFDKVDVNGPNTAPVYHLLKSKC 623
            T +S++DF ++ + G+   LS+++GKV+L+VNVA+ C  T   Y++ + + EKY+ QG  ++AFPCNQF  QEP  N E+     T  +         E  I+ K+DVNG N  P+Y  +K  C
Sbjct:   37 TNQSIFDFQIETLQGEYTDLSQYRGKVILLVNVATFCAYT-QQYTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESC 158          

HSP 2 Score: 22.3274 bits (46), Expect = 4.573e-19
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 1
Query:  646 VKWNFEKFLSGQKWKSHRRESP 711
            + WNFEKFL  +  +   R  P
Sbjct:  181 ITWNFEKFLIDRNGQPRFRFHP 202          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 1.006e-18
Identity = 53/119 (44.54%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  285 SLYDFTVKDIDGK-DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYHLLKSKC 623
            ++YD+    ++GK D+P  +++GK +L VNVA+ CGLT   Y EL+ L E  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG N   ++  LK  C
Sbjct:   39 TIYDYEALSLNGKEDIPFKQYRGKHVLFVNVATYCGLT-IQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.006e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  646 VKWNFEKFLSG 678
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX8_TETNG (Probable glutathione peroxidase 8 OS=Tetraodon nigroviridis GN=gpx8 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.157e-17
Identity = 44/107 (41.12%), Postives = 59/107 (55.14%), Query Frame = 3
Query:  291 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYHLL 611
            Y F VKD  G+ V L K++GK  L+VNVASR   T SNY  L  L+ +     F +LAFPC QFG  E GS+ + + FA   +   FP F ++ + G    P +  L
Sbjct:   49 YSFEVKDAKGRTVSLEKYRGKASLVVNVASRSEQTESNYRSLQELHRELGPSHFNVLAFPCAQFGETETGSSRDSEAFAKATYGVTFPFFSRIKIMGSEAEPAFRFL 155          
BLAST of DY258903 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.391e-17
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  285 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYHLLKSKC 623
            ++Y++    +DG + V   ++ GK +L VNVAS CGLT + Y EL+ L E+ +     +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG N   V+  LKS C
Sbjct:   39 TVYEYGANTLDGGEYVQFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.391e-17
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  646 VKWNFEKFLSG 678
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
The following BLAST results are available for this feature:
BLAST of DY258903 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX8B_XENLA1.321e-2137.67Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]
GPX1_YEAST1.725e-2144.83Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
BSAA_STAEQ5.020e-2137.20Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX8A_XENLA2.492e-2036.99Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX8_DANRE1.237e-1941.82Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX_ENCCU1.613e-1939.47Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_CAEEL4.573e-1938.71Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX5_MOUSE1.006e-1844.54Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX8_TETNG1.157e-1741.12Probable glutathione peroxidase 8 OS=Tetraodon nig... [more]
GPX6_RAT1.391e-1742.86Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev1 Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY258903 ID=DY258903; Name=DY258903; organism=Citrus clementina; type=EST; length=947bp
GATTGCAACGCCTCTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTC
GAAGGATAACTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATG
CCCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATT
CAATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGG
CTGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTC
CTTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCA
CCGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGC
AAAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATC
TAATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGAT
TTGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGA
TCAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATT
TCCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTT
ACCACTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAA
GTGGAACTTTGAGAAGTTCTTAAGTGGACAAAAATGGAAAAGTCATCGAA
GAGAATCCCCCCCCTACCTCCCCCTTCCAAATTGAGAAGGACAACCAGAA
ACCTTGGTGGGGAATGAAACCTGACTTGACCTGCTTGGCCAAGTCTCAAA
TGTATCCACCAAAAAAAAACCAAAAAAAAGTATATGTATATTTCTGAATC
CCGCATCACCTAAAAGGAATTTTTCCCCGGCCCCCCCCGAAATGGTGAAA
GGTTTTTAAACCCCAAAAAATACAAAAATTGGAACAAATTTCCTTGC
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