DY259738

Overview
NameDY259738
Unique NameDY259738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_OCHA4 (Phosphoenolpyruvate carboxykinase [ATP] OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=pckA PE=3 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 5.313e-67
Identity = 123/232 (53.02%), Postives = 163/232 (70.26%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            ++G+ N EGGCYAK I LS E EP+I+    +FGTVLEN+V DE+ R+ D+ D S+TENTR AYP+++IPNA     G  PKNII+L  DAFGV+PP++KL+  Q MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP++Y  +L + + +H    WLVNTGW+GG+YG G R+ +  TR ++ A   G+L +A +   P FG   P ++ GV + ILDP  TWA
Sbjct:  263 EHGIFNFEGGCYAKTIRLSAEAEPEIYATTQRFGTVLENVVLDEN-RQPDFDDGSLTENTRCAYPLDFIPNASKSGKGGQPKNIIMLTADAFGVMPPIAKLTPAQAMYHFLSGYTAKVAGTEKGVTEPEATFSTCFGAPFMPRHPSEYGNLLRKLIAEHKVDCWLVNTGWTGGAYGVGKRMPIKATRALLAAALDGSLNDAEFRIDPNFGFAVPVDVPGVDTSILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_RHISN (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobium sp. (strain NGR234) GN=pckA PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 6.939e-67
Identity = 122/236 (51.69%), Postives = 162/236 (68.64%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWAGNE 773
            SD GV N EGGCYAK I LS   EP+I+   + FGTV+EN+V DE  R  D+ + S+TENTR AYP+++IPNA      P P+ II+L  DAFGVLPP++KL+ EQ MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP++Y  +L + + ++G T WLVNTGW+GG+YG+G+R+ +  TR ++ A   G+L  A++     FG   P  + GV   ILDP  TW+  +
Sbjct:  262 SDKGVFNFEGGCYAKAIRLSEAAEPEIFATTRRFGTVMENVVLDER-RAPDFDNGSLTENTRIAYPLDFIPNASETGTAPQPRTIIMLTADAFGVLPPIAKLTPEQAMYHFLSGYTAKVAGTEKGVTEPEATFSTCFGAPFMPRHPSEYGNLLKDLIARNGVTCWLVNTGWTGGAYGTGSRMPIKVTRALLSAALDGSLNSAAFRTDANFGFAVPVSVPGVDDRILDPRSTWSDGQ 496          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_RHIEC (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=pckA PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 6.939e-67
Identity = 124/233 (53.22%), Postives = 159/233 (68.24%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S+NG+ N EGGCYAK I LS E EP+I+    +FGTVLEN+V +E  RE D+ D S+TENTR AYP+ +IPNA       HPK II+L  DAFGV+PP+++L+ +Q MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP +Y  +L E + +HG   WLVNTGW+GG+YG+G R+ +  TR ++ A  SG L +  +     FG   P  + GV   ILDP  TWA
Sbjct:  262 SENGIFNFEGGCYAKTIRLSAEAEPEIYATTQRFGTVLENVVLNER-REPDFDDGSLTENTRCAYPMHFIPNASETGRAGHPKTIIMLTADAFGVMPPIARLTPDQAMYHFLSGYTAKVAGTEKGVVEPEATFSTCFGAPFMPRHPAEYGNLLKELISRHGVECWLVNTGWTGGAYGTGKRMPIKATRGLLAAALSGKLGQLQFRTDTNFGFAVPVSVDGVDGSILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_RHIE6 (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobium etli (strain CIAT 652) GN=pckA PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 6.939e-67
Identity = 123/233 (52.79%), Postives = 160/233 (68.67%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S+NG+ N EGGCYAK I LS E EP+I+    +FGTVLEN+V +E  RE ++ D S+TENTR AYP+ +IPNA       HPK II+L  DAFGV+PP+++L+ +Q MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP +Y  +L + + +HG   WLVNTGW+GG+YG+G R+ +  TR ++ A  SG L +  +   P FG   P  + GV   ILDP  TWA
Sbjct:  262 SENGIFNFEGGCYAKTIRLSAEAEPEIYATTQRFGTVLENVVLNEG-REPNFDDGSLTENTRCAYPMHFIPNASETGRAGHPKTIIMLTADAFGVMPPIARLTPDQAMYHFLSGYTAKVAGTEKGVVEPEATFSTCFGAPFMPRHPAEYGNLLKDLISRHGVNCWLVNTGWTGGAYGTGKRMPIKATRALLAAALSGELGQVEFRADPNFGFAVPVSVNGVDGGILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_EUBR3 (Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=pckA PE=3 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 6.939e-67
Identity = 133/232 (57.33%), Postives = 163/232 (70.26%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVG-PHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            DNGV N EGGCYAK I L +E EPDI+NAI+   +LEN+   +  + +D+ DKSVTENTR +YPI +I N   P    P  KN+I L+ DAFGVLPPVS L+ EQT Y+F+SG+TA +AGTE G+ EP  TFSACFG AF+ LHPTKYAA L +KM+K GA  +LVNTGW+    G+G RI +  TR IIDAI SG +L A   K P+F  E PTE+ GV S ILDP  T+A
Sbjct:  269 DNGVFNFEGGCYAKVIGLDKESEPDIYNAIRRDALLENVTVADDGK-IDFEDKSVTENTRVSYPINHITNIVKPVSSAPAAKNVIFLSADAFGVLPPVSILTPEQTQYYFLSGFTAKLAGTERGITEPTPTFSACFGQAFLELHPTKYAAELVKKMEKSGAKAYLVNTGWN----GTGKRITIKDTRGIIDAILSGDILNAPTKKIPMFDFEVPTELPGVDSGILDPRDTYA 495          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_BRUME (Phosphoenolpyruvate carboxykinase [ATP] OS=Brucella melitensis GN=pckA PE=3 SV=2)

HSP 1 Score: 254.603 bits (649), Expect = 6.939e-67
Identity = 125/232 (53.88%), Postives = 161/232 (69.40%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            ++GV N EGGCYAK I LS E EP+I+    +FGTVLEN+V DE+ R+ D+ D S+TENTR AYP+++IPNA     G  PKNII+L  DAFGV+PP++KL+  Q MYHF+SGYTA VA TE+GV EP ATFS CFGA F+  HP++Y  +L + + +H    WLVNTGW+GG+YG G R+ +  TR ++ A   G+L  A +   P FG   P E+ GV S ILDP  TWA
Sbjct:  263 EHGVFNFEGGCYAKTIRLSAEAEPEIYATTQRFGTVLENVVLDEN-RQPDFDDGSLTENTRCAYPLDFIPNASKSGKGGQPKNIIMLTADAFGVMPPIAKLTPAQAMYHFLSGYTAKVAATEKGVTEPEATFSTCFGAPFMPRHPSEYGNLLRKLIAEHKVDCWLVNTGWTGGAYGVGKRMPIKATRALLAAALDGSLNNAEFRIDPNFGFAVPVEVPGVESSILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_AGRVS (Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=pckA PE=3 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 9.063e-67
Identity = 125/232 (53.88%), Postives = 157/232 (67.67%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            ++G+ N EGGCYAK I LS E EP+I+   K FGTVLEN+V DE+ R  D+ D S TENTR AYP+ +IPNA       HPK II+L  DAFGV+PP++KL+ EQ MYHF+SGYTA VAGTE GV EP ATFS CFGA F+  HP +Y  +L E + +H    WLVNTGW+GG+YG GNR+ +  TR ++ A  SG L +  +     FG   P  ++GV + ILDP  TWA
Sbjct:  263 EDGIFNFEGGCYAKTIRLSAEAEPEIYATTKRFGTVLENVVLDEN-RVPDFNDGSKTENTRCAYPLNFIPNASPTGRAGHPKTIIMLTADAFGVMPPIAKLTPEQAMYHFLSGYTAKVAGTERGVTEPEATFSTCFGAPFMPRHPAEYGNLLKELIARHEVDCWLVNTGWTGGAYGVGNRMPIKATRALLTAALSGELKKVEFRTDANFGFAVPVSVEGVDTSILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_RHIME (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobium meliloti GN=pckA PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.184e-66
Identity = 123/233 (52.79%), Postives = 161/233 (69.10%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S+ GV N EGGCYAK I LS   EP+I+   + FGTV+EN+V DE  R  D+ D S+TENTR AYP+ +IPNA      P P+ II+L  DAFGVLPP++KL+ EQ MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP++Y  +L + + ++G T WLVNTGW+GG++G+G+R+ +  TR ++ A   G+L  AS+     FG   P  + GV + ILDP  TWA
Sbjct:  262 SEKGVFNFEGGCYAKAIRLSEAAEPEIFATTRRFGTVMENVVLDER-RLPDFDDGSLTENTRCAYPLHFIPNASKTGTAPQPRTIIMLTADAFGVLPPIAKLTPEQAMYHFLSGYTAKVAGTEKGVTEPEATFSTCFGAPFMPRHPSEYGNLLKDLIARNGVTCWLVNTGWTGGAFGTGSRMPIKVTRALLSAALDGSLNNASFRTDANFGFAVPVSVPGVEAGILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_DEIGD (Phosphoenolpyruvate carboxykinase [ATP] OS=Deinococcus geothermalis (strain DSM 11300) GN=pckA PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.184e-66
Identity = 130/254 (51.18%), Postives = 168/254 (66.14%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWAGNEGLQGYTP*SLGNPFQKKF 827
            +D GV N EGGCYAK I L+ E EP I+   + +GTVLEN+V        D  D S+TENTR+AYPI  I N      G HPKNI+ L  DAFGVLPP+S+L+ EQTMY FISG+TA + GTE+GV EP+ TFS CFGA F+  HP +YA +LA+K+++ GA  WLVNTGW+GG YG G R+ +  TR +I+A  SG L    + + P FGLE PTE+ GVP E+L+P + WA ++     T   L   F++ F
Sbjct:  257 TDTGVFNFEGGCYAKVIHLNPEAEPAIYRTTQTYGTVLENVVLKPDGTP-DLNDGSLTENTRSAYPITQIDNIVPEGRGGHPKNIVFLTADAFGVLPPLSRLTPEQTMYQFISGFTAKIPGTEQGVTEPQPTFSTCFGAPFMPRHPGEYARLLAQKVRESGANVWLVNTGWTGGQYGEGQRMSIQHTRTLINAALSGQLDNVKFEREPFFGLEIPTEVPGVPKEVLNPREAWA-DKAAYDRTARKLARMFRENF 508          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_AZOC5 (Phosphoenolpyruvate carboxykinase [ATP] OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=pckA PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 1.184e-66
Identity = 121/233 (51.93%), Postives = 162/233 (69.53%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S+ GV N EGGCYAK I LS+E EP+I+ A  +FGT+LEN++  E TR  D+ D S+TENTR+AYP+++IPNA        PKNII+L  DAFGV+PP+++L+  Q MYHF+SGYTA VAGTE+GVK+P ATFS CFGA F+  HP+ Y  +L + + K+    WLVNTGW+GG YG G R+ +  TR ++ A   G+L +A++   P FG   P+ + G+   IL P KTWA
Sbjct:  262 SNTGVFNFEGGCYAKTIRLSKEAEPEIFAASDRFGTILENVILHEDTRVPDFDDGSLTENTRSAYPLDFIPNASPTGRAGVPKNIIMLTADAFGVMPPIARLTPAQAMYHFLSGYTAKVAGTEKGVKDPEATFSTCFGAPFMPRHPSVYGNLLRDLIAKYQVDCWLVNTGWTGGKYGVGRRMPIKVTRTLLTAALDGSLKDAAFRTDPYFGFSVPSSVPGIEPHILYPSKTWA 494          
The following BLAST results are available for this feature:
BLAST of DY259738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_OCHA45.313e-6753.02Phosphoenolpyruvate carboxykinase [ATP] OS=Ochroba... [more]
PCKA_RHISN6.939e-6751.69Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobi... [more]
PCKA_RHIEC6.939e-6753.22Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobi... [more]
PCKA_RHIE66.939e-6752.79Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobi... [more]
PCKA_EUBR36.939e-6757.33Phosphoenolpyruvate carboxykinase [ATP] OS=Eubacte... [more]
PCKA_BRUME6.939e-6753.88Phosphoenolpyruvate carboxykinase [ATP] OS=Brucell... [more]
PCKA_AGRVS9.063e-6753.88Phosphoenolpyruvate carboxykinase [ATP] OS=Agrobac... [more]
PCKA_RHIME1.184e-6652.79Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobi... [more]
PCKA_DEIGD1.184e-6651.18Phosphoenolpyruvate carboxykinase [ATP] OS=Deinoco... [more]
PCKA_AZOC51.184e-6651.93Phosphoenolpyruvate carboxykinase [ATP] OS=Azorhiz... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259738 ID=DY259738; Name=DY259738; organism=Citrus clementina; type=EST; length=1040bp
GATAATGGAGTATCTTTCCAGCAGTGCTCATCATCTCCAATTAAGTACCG
GTTATGATCAGTAGACAGAGTGATAATGGAGTATCAAACATTGAAGGCGG
GTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGAGCCTGATATCT
GGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTGTGTTTGATGAG
CATACACGAGAAGTGGACTACTTGGACAAATCTGTCACGGAGAACACTCG
TGCCGCGTATCCCATAGAGTATATCCCAAATGCAAAGATACCTTGTGTTG
GCCCTCATCCAAAGAATATAATCCTTTTGGCTTGTGATGCATTTGGTGTA
CTCCCACCTGTGAGCAAGTTGAGCTTGGAACAGACCATGTACCACTTCAT
CAGTGGCTACACTGCTCTGGTTGCTGGAACAGAGGAAGGTGTGAAGGAGC
CACGGGCAACATTCTCAGCCTGTTTTGGTGCCGCATTTATAATGCTACAC
CCTACAAAGTATGCTGCCATGCTGGCTGAAAAAATGCAGAAGCATGGGGC
TACTGGATGGTTGGTTAACACTGGCTGGTCAGGTGGAAGCTATGGGTCAG
GAAATCGTATTAAATTAGCTTTTACGAGAAGAATCATTGATGCAATACAT
TCTGGGACTCTTTTGGAGGCAAGCTACACAAAGACTCCAGTTTTTGGGCT
TGAGACCCCAACTGAGATAAAGGGAGTGCCCTCAGAAATCCTGGATCCAG
AAAAAACATGGGCCGGAAATGAAGGGCTACAGGGATACACTCCTTGAAGC
CTAGGAAACCCTTTTCAAAAAAAATTTTGAGGGGCTTTGGGAATCCACAG
AATTGGAAAGGAACACCAAGCCTTACCGGAGAGATTCCTGGCATCCGGCC
CCCTTTTCCTAATCAAAAGTCTTCAAAAACGAACCGGGGCGCCCAGGGGA
CACCAAAAAAATAAAAAAAAACCTTATTTCGCCAAGGCGAGCCATACGTG
TGGGTAAAACTAAAAAAAGCCCCCCTACCCCCTCCCGGGA
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