DY259738

Overview
NameDY259738
Unique NameDY259738
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1040
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_METPB (Phosphoenolpyruvate carboxykinase [ATP] OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=pckA PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.546e-66
Identity = 121/254 (47.64%), Postives = 166/254 (65.35%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWAGNEGLQGYTP*SLGNPFQKKF 827
            S +G+ N EGGCYAK I LSR  EP+I+    +FGTV+EN+V D  TR  D+ D ++TENTR AYP+++I NA       HPKNI++L CDAFGV+PP+++L+  + MYHF+SGYTA VAGTE G+  P ATFS CFGA F+  HP+ Y  +L   M +HG   WLVNTGW+GG  G+G R+ +  TRR++ A   G+L +  + + P FG   P E+ GV +++L P +TW  N+     T   L   F++ F
Sbjct:  264 SRDGIFNFEGGCYAKTIRLSRNAEPEIYATTERFGTVMENVVIDPLTRVPDFDDATLTENTRCAYPLDFIANASATGRAGHPKNIVMLTCDAFGVMPPIARLTGAEAMYHFLSGYTAKVAGTERGLTAPEATFSTCFGAPFMPRHPSVYGNLLRALMAEHGVDCWLVNTGWTGGGVGTGRRMPIRVTRRLLSAALDGSLAQTEFRRDPYFGFSVPVEVAGVETQVLSPVETWT-NKAAFAETATRLVTMFRENF 516          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_CAMLR (Phosphoenolpyruvate carboxykinase [ATP] OS=Campylobacter lari (strain RM2100 / D67 / ATCC BAA-1060) GN=pckA PE=3 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.546e-66
Identity = 125/230 (54.35%), Postives = 157/230 (68.26%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTW 761
            D GV N EGGCYAKCI+L  + EP+I+ AIK   +LEN+V  +    VD+ + S TENTR +YPIE+I N +      HP NII L+ DAFGVLPPVSKLS EQ MY+F+SGYTA VAGTE G+ EP ATFSACFG  F+ LHPT YA +L EK+ KH    +LVNTGWSGG+YG G R+ +  TR  I+AI  G++    +    +F L  P E+ GV S++L+P  TW
Sbjct:  256 DEGVFNFEGGCYAKCINLDPQSEPEIYGAIKQNALLENVVLKDDL-SVDFNNGSKTENTRVSYPIEHILNHEPSLSAGHPSNIIFLSADAFGVLPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPVATFSACFGEVFLPLHPTVYAKLLGEKISKHNVNVYLVNTGWSGGAYGVGKRMSIKATRACINAILDGSIQNCEFENYDLFNLAVPKELAGVESKLLNPINTW 484          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_NITHX (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=pckA PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 2.019e-66
Identity = 123/234 (52.56%), Postives = 158/234 (67.52%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGV-KEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S  G+ N EGGCYAKCI LS+E EP+I+ A K FG VLEN+V DE TR  D+ D S TENTR+AYP+E+IPNA +      PKN+++LA DAFGVLPP+++L+  Q MYHF+SGYTA VAGTE G+  EP+  FS CFG+ F+   P+ Y  ML E + +H    WLVNTGW+GG YG+G R+ +  TR ++ A   G+L E  +     FG   PT + G+   ILDP KTWA
Sbjct:  262 SKEGIFNFEGGCYAKCIKLSQEAEPEIYAASKRFGAVLENVVHDESTRVPDFDDGSKTENTRSAYPLEFIPNASLTGRAGQPKNLVMLAADAFGVLPPIARLTPAQAMYHFLSGYTAKVAGTERGLGNEPQPEFSTCFGSPFLPRDPSVYGNMLRELIARHNVDCWLVNTGWTGGKYGTGRRMPIKVTRALLGAALDGSLREVQFRTDRYFGFAVPTSVPGIEPHILDPIKTWA 495          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_NOVAD (Phosphoenolpyruvate carboxykinase [ATP] OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=pckA PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.002e-65
Identity = 125/238 (52.52%), Postives = 161/238 (67.65%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGG--SYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWAGNE 773
            SD  V N EGGCYAK I LS E EP+I+   K FGTVLEN+V D  TR +D  D S+ EN+R +YPI++IPNA    +GP P N+I L  DA+GVLPP+++L+ +Q MYHF+SGYTA VAGTE GV EP ATFS CFGA F+  HP+ Y  +L E++ K G   WLVNTGWSGG  +     R+ +  TR +++A   G+L  A++TK P FG E P E+ GV +++LDP   WA  E
Sbjct:  261 SDTAVFNFEGGCYAKMIRLSAEAEPEIFATTKRFGTVLENVVIDPVTRTIDLDDNSLAENSRGSYPIDFIPNASEENLGPVPANLIFLTADAYGVLPPIARLTPDQAMYHFLSGYTARVAGTEIGVTEPEATFSTCFGAPFMPRHPSVYGNLLKERIAKGGVKCWLVNTGWSGGKATQEGIKRMPIKATRALLNAALDGSLNSATFTKDPNFGFEVPVEVPGVDTKLLDPRGAWADGE 498          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_NITWN (Phosphoenolpyruvate carboxykinase [ATP] OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=pckA PE=3 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 1.002e-65
Identity = 124/234 (52.99%), Postives = 157/234 (67.09%), Query Frame = 3
Query:   69 SDNGVSNIEGGCYAKCIDLSREKEPDIWNAIK-FGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGV-KEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            S +G+ N EGGCYAKCI LSRE EP+I+ A K FG VLEN+V DE TR  D+ D S TENTR+AYP+E+IPNA +      PKN+++LA DAFGVLPP+++L+  Q MYHF+SGYTA VAGTE  +  EP+  FSACFG+ F+  HP  Y  ML   + KH    WLVNTGW+GG YG+G R+ +  TR ++ A   G+L    +     FG   PT + GV   ILDP +TWA
Sbjct:  262 SKDGIFNFEGGCYAKCIRLSREAEPEIYAASKRFGAVLENVVHDEVTRVPDFNDGSKTENTRSAYPLEFIPNASLTGCAGQPKNLVMLAADAFGVLPPIARLTPAQAMYHFLSGYTAKVAGTERDLGNEPQPEFSACFGSPFLPRHPGVYGNMLRALIAKHNVDCWLVNTGWTGGKYGTGRRMPIKVTRALLGAALDGSLRGVPFHDDRYFGFAVPTSVPGVEPHILDPIRTWA 495          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_RHILO (Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobium loti GN=pckA PE=3 SV=1)

HSP 1 Score: 249.595 bits (636), Expect = 2.232e-65
Identity = 122/231 (52.81%), Postives = 156/231 (67.53%), Query Frame = 3
Query:   75 NGVSNIEGGCYAKCIDLSREKEPDIWNAI-KFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            +G+ N EGGCYAK I LS E EP+I+    +FGTVLEN+V D      D+ D  +TENTR AYP+++IPNA       HPKNII+L  DAFGV+PP+++L+  Q MYHF+SGYTA VAGTE+GV EP ATFS CFGA F+  HP++Y  +L E +  HGA  WLVNTGW+GG+YG+G R+ +  TR ++ A   G+L    +     FG E P  + GV S ILDP  TWA
Sbjct:  264 HGIFNFEGGCYAKTIKLSAEAEPEIFATTQRFGTVLENVVLDADGVP-DFNDGRLTENTRCAYPLDFIPNASKTGRASHPKNIIMLTADAFGVMPPIARLTPAQAMYHFLSGYTAKVAGTEKGVTEPEATFSTCFGAPFMPRHPSEYGNLLRELIASHGADCWLVNTGWTGGAYGTGKRMPIKATRALLTAALDGSLKTGEFRTDANFGFEVPVAVPGVDSAILDPRSTWA 493          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_SELRU (Phosphoenolpyruvate carboxykinase [ATP] OS=Selenomonas ruminantium GN=pckA PE=3 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 8.483e-65
Identity = 127/236 (53.81%), Postives = 162/236 (68.64%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCVG-----PHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            D GV N EGGCYAK I+L  E EPDI+ AIK   +LEN+  D+    +D+ DK++TENTR +YPI++I       V      P  K++I L+ DAFGVLPPVS L+ EQT Y+F+SG+TA +AGTE G+ EP  TFSACFG AF+ LHPTKYA  L +KM+ +G   +LVNTGW+    GSG RI +  TR IIDAIHSG + +A   K P F LE PTE++GV + ILDP+ T+A
Sbjct:  269 DEGVFNFEGGCYAKVINLDMESEPDIYGAIKRNALLENVTLDDKGN-IDFADKTITENTRVSYPIDHIKGTVKGFVNDKSAAPAAKSVIFLSADAFGVLPPVSILTPEQTKYYFLSGFTAKLAGTERGITEPTPTFSACFGQAFLELHPTKYAEELVKKMEANGTKAYLVNTGWN----GSGKRISIKDTRGIIDAIHSGAIKKAPTKKIPFFNLEVPTELEGVDTNILDPKDTYA 499          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_ANASU (Phosphoenolpyruvate carboxykinase [ATP] OS=Anaerobiospirillum succiniciproducens GN=pckA PE=1 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 8.483e-65
Identity = 133/253 (52.57%), Postives = 168/253 (66.40%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWAGNEGLQGYTP*SLGNPFQKKF 827
            D+GV N EGGCYAK I+LS+E EPDIW AIK   +LEN+  D + + VD+ DKSVTENTR +YPI +I N   P    P  K +I L+ DAFGVLPPVS LS EQT Y+F+SG+TA +AGTE G+ EP  TFS+CFGAAF+ L PTKYA +L ++M+  GA  +LVNTGW+    G+G RI +  TR IIDAI  G++  A+    P F    PTE+KGV ++ILDP  T+A     +      L   FQK F
Sbjct:  269 DDGVFNFEGGCYAKVINLSKENEPDIWGAIKRNALLENVTVDANGK-VDFADKSVTENTRVSYPIFHIKNIVKPVSKAPAAKRVIFLSADAFGVLPPVSILSKEQTKYYFLSGFTAKLAGTERGITEPTPTFSSCFGAAFLTLPPTKYAEVLVKRMEASGAKAYLVNTGWN----GTGKRISIKDTRGIIDAILDGSIDTANTATIPYFNFTVPTELKGVDTKILDPRNTYADASEWEVKAK-DLAERFQKNF 515          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_PARD8 (Phosphoenolpyruvate carboxykinase [ATP] OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=pckA PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.447e-64
Identity = 129/232 (55.60%), Postives = 159/232 (68.53%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTWA 764
            + GV N EGGCYAK I+L +E EPDI+NAIK   +LEN+      + +D+ DKSVTENTR +YPI +I N   P   GPH K +I L+ DAFGVLPPVS L+ EQT Y+F+SG+TA +AGTE G+ EP  TFSACFGAAF+ LHPTKY   L +KM+  GA  +LVNTGW+    GSG RI +  TR IIDAI  G++ EA   K P F  E PT + GV  +ILDP  T+A
Sbjct:  270 NEGVFNYEGGCYAKVINLDKESEPDIYNAIKRDALLENVTVAADGK-IDFADKSVTENTRVSYPIYHIENIVKPVSKGPHAKQVIFLSADAFGVLPPVSILTPEQTQYYFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTKYGEELVKKMEMTGAKAYLVNTGWN----GSGKRISIKDTRGIIDAILDGSINEAPTKKIPYFDFEVPTALPGVDPKILDPRDTYA 496          
BLAST of DY259738 vs. ExPASy Swiss-Prot
Match: PCKA_BACTN (Phosphoenolpyruvate carboxykinase [ATP] OS=Bacteroides thetaiotaomicron GN=pckA PE=3 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 1.447e-64
Identity = 128/231 (55.41%), Postives = 158/231 (68.40%), Query Frame = 3
Query:   72 DNGVSNIEGGCYAKCIDLSREKEPDIWNAIKFGTVLENIVFDEHTREVDYLDKSVTENTRAAYPIEYIPNAKIPCV-GPHPKNIILLACDAFGVLPPVSKLSLEQTMYHFISGYTALVAGTEEGVKEPRATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGSGNRIKLAFTRRIIDAIHSGTLLEASYTKTPVFGLETPTEIKGVPSEILDPEKTW 761
            D GV N EGGCYAK I+L +E EPDIWNAIK   +LEN   +    E+++ DKSVTENTR +YPI +I N   P   GPH K +I L+ DAFGVLPPVS L+ EQT Y+F+SG+TA +AGTE G+ EP  TFSACFGAAF+ LHPTKY   L +KM+K GA  +LVNTGW+    G+G RI +  TR IIDAI  G++ +A     P F    PTE+ GV  +ILDP  T+
Sbjct:  270 DEGVFNFEGGCYAKVINLDKESEPDIWNAIKRDALLENCTVNAEG-EINFADKSVTENTRVSYPIYHIENIVKPVSKGPHAKQVIFLSADAFGVLPPVSILNAEQTKYYFLSGFTAKLAGTERGITEPTPTFSACFGAAFLSLHPTKYGEELVKKMEKTGAKAYLVNTGWN----GTGKRISIKDTRGIIDAILDGSIDKAPTKVMPYFDFVVPTELPGVDPKILDPRDTY 495          
The following BLAST results are available for this feature:
BLAST of DY259738 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_METPB1.546e-6647.64Phosphoenolpyruvate carboxykinase [ATP] OS=Methylo... [more]
PCKA_CAMLR1.546e-6654.35Phosphoenolpyruvate carboxykinase [ATP] OS=Campylo... [more]
PCKA_NITHX2.019e-6652.56Phosphoenolpyruvate carboxykinase [ATP] OS=Nitroba... [more]
PCKA_NOVAD1.002e-6552.52Phosphoenolpyruvate carboxykinase [ATP] OS=Novosph... [more]
PCKA_NITWN1.002e-6552.99Phosphoenolpyruvate carboxykinase [ATP] OS=Nitroba... [more]
PCKA_RHILO2.232e-6552.81Phosphoenolpyruvate carboxykinase [ATP] OS=Rhizobi... [more]
PCKA_SELRU8.483e-6553.81Phosphoenolpyruvate carboxykinase [ATP] OS=Selenom... [more]
PCKA_ANASU8.483e-6552.57Phosphoenolpyruvate carboxykinase [ATP] OS=Anaerob... [more]
PCKA_PARD81.447e-6455.60Phosphoenolpyruvate carboxykinase [ATP] OS=Parabac... [more]
PCKA_BACTN1.447e-6455.41Phosphoenolpyruvate carboxykinase [ATP] OS=Bactero... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YA18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259738 ID=DY259738; Name=DY259738; organism=Citrus clementina; type=EST; length=1040bp
GATAATGGAGTATCTTTCCAGCAGTGCTCATCATCTCCAATTAAGTACCG
GTTATGATCAGTAGACAGAGTGATAATGGAGTATCAAACATTGAAGGCGG
GTGCTATGCCAAATGCATTGATCTTTCAAGGGAGAAGGAGCCTGATATCT
GGAATGCCATCAAATTCGGGACTGTGCTAGAAAACATTGTGTTTGATGAG
CATACACGAGAAGTGGACTACTTGGACAAATCTGTCACGGAGAACACTCG
TGCCGCGTATCCCATAGAGTATATCCCAAATGCAAAGATACCTTGTGTTG
GCCCTCATCCAAAGAATATAATCCTTTTGGCTTGTGATGCATTTGGTGTA
CTCCCACCTGTGAGCAAGTTGAGCTTGGAACAGACCATGTACCACTTCAT
CAGTGGCTACACTGCTCTGGTTGCTGGAACAGAGGAAGGTGTGAAGGAGC
CACGGGCAACATTCTCAGCCTGTTTTGGTGCCGCATTTATAATGCTACAC
CCTACAAAGTATGCTGCCATGCTGGCTGAAAAAATGCAGAAGCATGGGGC
TACTGGATGGTTGGTTAACACTGGCTGGTCAGGTGGAAGCTATGGGTCAG
GAAATCGTATTAAATTAGCTTTTACGAGAAGAATCATTGATGCAATACAT
TCTGGGACTCTTTTGGAGGCAAGCTACACAAAGACTCCAGTTTTTGGGCT
TGAGACCCCAACTGAGATAAAGGGAGTGCCCTCAGAAATCCTGGATCCAG
AAAAAACATGGGCCGGAAATGAAGGGCTACAGGGATACACTCCTTGAAGC
CTAGGAAACCCTTTTCAAAAAAAATTTTGAGGGGCTTTGGGAATCCACAG
AATTGGAAAGGAACACCAAGCCTTACCGGAGAGATTCCTGGCATCCGGCC
CCCTTTTCCTAATCAAAAGTCTTCAAAAACGAACCGGGGCGCCCAGGGGA
CACCAAAAAAATAAAAAAAAACCTTATTTCGCCAAGGCGAGCCATACGTG
TGGGTAAAACTAAAAAAAGCCCCCCTACCCCCTCCCGGGA
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