DY259749

Overview
NameDY259749
Unique NameDY259749
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length919
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_LISW6 (Glutamate 5-kinase OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=proB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 43/119 (36.13%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  177 LKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 533
            L +L ++G E+ILVSSGA+GVG  +L+             +P +  D +A A+VGQS LM +Y   F +      Q+L+T         R+ + +T++SLL   +IPI NEND V+  +
Sbjct:   39 LSDLRNEGKEVILVSSGAIGVGCHKLQLP----------ARPTDIPDLQAVASVGQSELMHIYSKFFGEYGQVVGQVLLTRDVTDFPISRENVMNTLESLLSRGIIPIVNENDTVAVEE 147          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_LISMH (Glutamate 5-kinase OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=proB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 45/119 (37.82%), Postives = 67/119 (56.30%), Query Frame = 3
Query:  177 LKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVSTRK 533
            L +L ++G E+ILVSSGA+GVG  +L+   +  +S+ DLQ         A A+VGQS LM +Y   F +      Q+L+T         R+ + +T+ SLL   +IPI NEND V+  +
Sbjct:   39 LSDLRNEGKEVILVSSGAIGVGCHKLQL-PVRPTSIPDLQ---------AVASVGQSELMHIYSKFFGEYGQVVGQVLLTRDVTDFPISRENVMNTLDSLLSRGIIPIVNENDTVAVEE 147          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_LEPCP (Glutamate 5-kinase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=proB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 42/118 (35.59%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            QL  L  QG E+++VSSGA+  G +RL +            +P+   + +A AAVGQ  L  +Y+T   +  + S+Q+L+T +D  D +       T+ +LL L V+P+ NEND V T
Sbjct:   38 QLAALVRQGREVVMVSSGAIAEGMKRLGWST----------RPKELHELQAAAAVGQMGLAQVYETSLREQGLGSAQVLLTHADLADRERYLNARSTLLTLLGLGVVPVINENDTVVT 145          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_BORPD (Glutamate 5-kinase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=proB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.647e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q+  L  QG +++LVSSGA+  G  RL +RK          +P    + +A AAVGQ  L   Y+  F++  + ++Q+L+T  D  D         T+ +L+ L V+PI NEND V T
Sbjct:   44 QIAALRQQGKQVVLVSSGAIAEGMARLGWRK----------RPSVMHELQAAAAVGQMGLCQAYEAAFAEHGLRTAQILLTHEDLADRHRYLNARSTLFALMRLGVVPIVNENDTVVT 151          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_STRSY (Glutamate 5-kinase OS=Streptococcus suis (strain 05ZYH33) GN=proB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVS 524
            QL +L+ +G++I+LV+SG++  G +RL + K          +P    + +A AAVGQ  L+  Y     +  + S+Q+L+T  DF D    +     +Q LL  R IPI NEND ++
Sbjct:   33 QLAQLHQKGYQIVLVTSGSIAAGFRRLGFDK----------RPTKIAEKQASAAVGQGLLIEEYTQNLMKDGIVSAQILLTQDDFADARRYQNASQALQVLLKQRAIPIINENDTIA 139          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_STRS2 (Glutamate 5-kinase OS=Streptococcus suis (strain 98HAH33) GN=proB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 40/117 (34.19%), Postives = 64/117 (54.70%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVS 524
            QL +L+ +G++I+LV+SG++  G +RL + K          +P    + +A AAVGQ  L+  Y     +  + S+Q+L+T  DF D    +     +Q LL  R IPI NEND ++
Sbjct:   33 QLAQLHQKGYQIVLVTSGSIAAGFRRLGFDK----------RPTKIAEKQASAAVGQGLLIEEYTQNLMKDGIVSAQILLTQDDFADARRYQNASQALQVLLKQRAIPIINENDTIA 139          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_SHEHH (Glutamate 5-kinase OS=Shewanella halifaxensis (strain HAW-EB4) GN=proB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 42/118 (35.59%), Postives = 63/118 (53.39%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            Q+  L   G E++L +SGA+  G++ L Y +L          P      +  AAVGQS L+  +  LFS   +   QLL+T +D  D +      D++ +LL+  +IPI NENDAV+T
Sbjct:   38 QMACLMKAGVEVVLCTSGAIAAGKEHLGYPQL----------PDTIASKQLLAAVGQSQLILAWSQLFSIYGLHVGQLLLTRADLHDRERYLNARDSLNALLNNGIIPIINENDAVAT 145          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_PSEPF (Glutamate 5-kinase OS=Pseudomonas fluorescens (strain Pf0-1) GN=proB PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            EQ+  L+  G E++LVSSGAV  G  RL +     S++ +LQ         A AA+GQ  L+  +++ F++    ++Q+L+T  D  D         T+++L++L+VIP+ NEND V T
Sbjct:   37 EQMVALHEAGVELVLVSSGAVAAGMSRLGWTARP-SAMHELQ---------AAAAIGQMGLVQAWESSFAEHGRHTAQILLTHDDLSDRKRYLNARSTLRALVELKVIPVINENDTVVT 145          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_PSEF5 (Glutamate 5-kinase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=proB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 42/119 (35.29%), Postives = 68/119 (57.14%), Query Frame = 3
Query:  171 EQLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAVST 527
            EQ+  L+  G E++LVSSGAV  G  RL +     S++ +LQ         A AA+GQ  L+  +++ F++    ++Q+L+T  D  D         T+++L++L+VIP+ NEND V T
Sbjct:   33 EQMVALHEAGVELVLVSSGAVAAGMSRLGWTARP-SAMHELQ---------AAAAIGQMGLVQAWESSFAEHGRHTAQILLTHDDLSDRKRYLNARSTLRALVELKVIPVINENDTVVT 141          
BLAST of DY259749 vs. ExPASy Swiss-Prot
Match: PROB_NITEC (Glutamate 5-kinase OS=Nitrosomonas eutropha (strain C91) GN=proB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.457e-11
Identity = 44/116 (37.93%), Postives = 62/116 (53.45%), Query Frame = 3
Query:  174 QLKELNSQGFEIILVSSGAVGVGRQRLRYRKLVNSSLADLQKPQNELDGKACAAVGQSSLMALYDTLFSQLDVTSSQLLVTDSDFRDEDFRKQLYDTVQSLLDLRVIPIFNENDAV 521
            Q+  L   G E++LVSSGAV  G QRL + K   ++L +LQ         A AAVGQ  L   Y   FS+  + ++Q+L+T  D            T+ +LL+L ++PI NEND V
Sbjct:   39 QISRLKKMGKEVVLVSSGAVAEGMQRLGW-KTRPAALYELQ---------AAAAVGQMDLAQAYADCFSEYKLLTAQILLTHDDLSSRKRYLNARSTILTLLNLDIVPIINENDTV 144          
The following BLAST results are available for this feature:
BLAST of DY259749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 271
Match NameE-valueIdentityDescription
PROB_LISW62.647e-1136.13Glutamate 5-kinase OS=Listeria welshimeri serovar ... [more]
PROB_LISMH2.647e-1137.82Glutamate 5-kinase OS=Listeria monocytogenes serot... [more]
PROB_LEPCP2.647e-1135.59Glutamate 5-kinase OS=Leptothrix cholodnii (strain... [more]
PROB_BORPD2.647e-1135.59Glutamate 5-kinase OS=Bordetella petrii (strain AT... [more]
PROB_STRSY3.457e-1134.19Glutamate 5-kinase OS=Streptococcus suis (strain 0... [more]
PROB_STRS23.457e-1134.19Glutamate 5-kinase OS=Streptococcus suis (strain 9... [more]
PROB_SHEHH3.457e-1135.59Glutamate 5-kinase OS=Shewanella halifaxensis (str... [more]
PROB_PSEPF3.457e-1135.29Glutamate 5-kinase OS=Pseudomonas fluorescens (str... [more]
PROB_PSEF53.457e-1135.29Glutamate 5-kinase OS=Pseudomonas fluorescens (str... [more]
PROB_NITEC3.457e-1137.93Glutamate 5-kinase OS=Nitrosomonas eutropha (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259749 ID=DY259749; Name=DY259749; organism=Citrus clementina; type=EST; length=919bp
CTTTTCCTTCTTCCTCTCCCCCACACAAAAACACACACATGATGGAATCT
TTCCAAGATCATACTCGTGACTTCCTCAAGAACGTCAAGCGTGTTGTTGT
TAAGGTTGGAACAGCTGTGGTTACTCGAAGTGATGGACGATTAGCTTTGG
GAAGGCTTGGAGCTCTTTTAGAGCAGCTTAAAGAGTTAAATTCTCAAGGC
TTTGAGATTATTTTAGTTTCTTCAGGCGCTGTTGGTGTTGGCCGCCAAAG
GCTTAGATACAGAAAATTGGTCAATAGCAGCTTGGCTGATCTCCAAAAGC
CGCAGAATGAGCTTGATGGGAAGGCTTGTGCCGCAGTTGGGCAGAGTAGT
CTCATGGCTCTTTATGATACCTTGTTCAGCCAGCTTGATGTGACCTCATC
CCAACTTCTTGTGACGGATAGTGATTTTAGGGATGAAGATTTCAGAAAGC
AACTCTATGACACTGTTCAATCATTGTTAGATTTGAGGGTTATTCCTATT
TTTAATGAAAATGACGCAGTTAGTACTAGGAAAGCACCATACGAGGTATC
TTGTTCCCTTCTGAATTAAAAATGAAACTTCCTGTGCATTTTTTTTTATT
AAAAATTCCTTTTCTTCCCCCTTGGGAATATTGAAATTTCCTTTTTCCTC
CCTTTTGGGACCTAAGGGGTTTGCCTACCTAGGTGAAATTTGTCCCCTTG
TGGAATATTTCTTATTCTTTATATTTAATTTCCATAAAAAACAAAAAACC
CAAGTGAAAAAAAAAAAACAAAAAAAACAAACCCAACCTTTCCTGCAAAA
ACCTCGGCAATACAAAAACTTTCTTCTTTACTTCTTTCTCCACCAACGGG
CCATTATAATACAATATAAACCCTCATTAACCATCGCACTCGTAATCCTC
AGAGCGCGTTCCCATTTGT
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