DY259756

Overview
NameDY259756
Unique NameDY259756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length996
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14610 contig Ccv1_Contig14610:1011..2006. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 3.740e-38
Identity = 77/209 (36.84%), Postives = 120/209 (57.42%), Query Frame = 2
Query:    2 YWSYLRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 628
            ++SY RNP +N  R    L+ +   GL++W K +  + QQDL ++FG+MY++ +F G +N  +VI  I  ER V+YRER A M+++  Y+ +QV                     IG+   + K     Y ++ S +IF   GM++VALTP   +A  + S F S+ NLF+GF++ +  IP WW W Y+LSP +W L GL++ Q GD++
Sbjct: 1135 HYSYWRNPSHNITRIVFILLDSTLCGLLFWQKAEDINNQQDLISIFGSMYTLVVFPGMNNCAAVINFIAAERNVFYRERFARMYSSWAYSFSQVLIEVPYSLLQSLLCTIIVYPTIGYHMSVYKMFWSLYSIFCSLLIFNYSGMLMVALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVD 1343          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: ABCG5_DICDI (ABC transporter G family member 5 OS=Dictyostelium discoideum GN=abcG5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 7.103e-13
Identity = 52/197 (26.40%), Postives = 81/197 (41.12%), Query Frame = 2
Query:   32 NAIRFGMTLVIAIFFGLI----YWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTL---YGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGL 601
            N   F   +   IFFGL+    YW  G   S   +   L   + +  IF    ++ + +     ER V+Y ++A   +    Y ++ +                    +   +     F  F YFM   FI   L   +  M  A++P  ++A +  S  LS+W LFSGF   ++DI  WW W Y++SP  W   GL
Sbjct:  474 NYYNFATRVFKGIFFGLLLGTLYWRIGHNQSGGMERFGLLFFIMTTIIF----SSFAAVNSFFGERKVFYSQKALHYYKTGAYFISSIICDIPAGLIEVAFFGPIVYWLANLR---PVFIRFVYFMILLFITDNLSLSFAKMCAAISPTIEIANVTASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGL 663          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: ABCGI_DICDI (ABC transporter G family member 18 OS=Dictyostelium discoideum GN=abcG18 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.582e-12
Identity = 48/204 (23.53%), Postives = 95/204 (46.57%), Query Frame = 2
Query:   41 RFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFK-----WELGKFCLFFYFMWASFIIFTLYGMMIVALT---PGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 628
            R G + V+ +  G ++    +   +Q D+ N    ++   +F G +  +S+IP +  ER V+YRE+A+GM+    Y L  V                    + G       W+      FFY  + S +++  +G+  +A     P +++A ++    LSV +LF+GF++    +P  W+W ++L  +++ L   +  +  D+E
Sbjct: 1210 RVGRSFVLGLVIGTLFL---RLDKEQNDVFNRISFLFFSLMFGGMAG-LSIIPTVSTERGVFYREQASGMYRVWIYYLTFVLSDLPFVIITSYAYVIPVYFLTGLSLSNHGWD------FFYHSFISVMLYLNFGLTSIAFATSLPVEEMAFLLNGVLLSVTSLFAGFMIPPPSMPAAWKWAFYLDFISYPLKAFLITEFKDME 1403          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: ABCG6_DICDI (ABC transporter G family member 6 OS=Dictyostelium discoideum GN=abcG6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.067e-12
Identity = 45/200 (22.50%), Postives = 85/200 (42.50%), Query Frame = 2
Query:    5 WSYLRNPQYNAI-RFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGL 601
            ++ +R   YN + R    +   +  G +YW  G   S   +    FG ++ I + +  S+  + +     ER V+Y ++A   +    Y ++ +                    +   +    +F  F   +  +  +   +  M  A++P  ++A ++ S  LS+W LFSGF   ++DI  WW W Y++SP  W   GL
Sbjct:  477 FTMIRRNYYNFLTRVAKGIFFGLLLGTLYWRIGHNQSGGMER---FGLLFFIMVTIIFSS-FAAVNSFFGERKVFYSQKALYYYKTGAYFISSIICDIPAGILEVAFFGPIVYWLANLRPVFIRFVYFMLLLIMTDNLSLSFAKMCAAISPTIEIANVIASVILSIWLLFSGFTAPKNDIGGWWIWLYYISPYTWIFQGL 672          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: AB20G_ARATH (ABC transporter G family member 20 OS=Arabidopsis thaliana GN=ABCG20 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.285e-11
Identity = 50/206 (24.27%), Postives = 79/206 (38.35%), Query Frame = 2
Query:   17 RNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFM----WASFIIFTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGD 622
            R P+   IR G  LV  +    I+W         Q+    F    S   +         IPV   ER ++ RE A   +    Y LA                     + +G       F  FF+ +    WA     T    ++  +  G  V   +L++FL    LFSGF ++R  IP++W W+++LS V +   G++  +  D
Sbjct:  448 RQPELFGIRLGAVLVTGMILATIFWKLDNSPRGIQERLGFFAFAMSTTFY----TCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVGLAGGSEGFLFFFFTILTAFWAGSSFVTFLSGVVSHVMIGFTVVVAILAYFL----LFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLQNEFED 645          
BLAST of DY259756 vs. ExPASy Swiss-Prot
Match: ABCG2_DICDI (ABC transporter G family member 2 OS=Dictyostelium discoideum GN=abcG2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.648e-11
Identity = 49/208 (23.56%), Postives = 94/208 (45.19%), Query Frame = 2
Query:   14 LRNPQYNAIRFGMTLVIAIFFGLIYWDKGQKTSKQQDLQNLFGAMYSICIFLGTSNAISVIPVICVERTVYYRERAAGMFAAMPYALAQVAXXXXXXXXXXXXXXXXXXAMIGFKWELGKFCLFFYFMWASFII---FTLYGMMIVALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLE 628
            +R  Q    R   +L + +  G ++    +    Q+++ N    ++   +F G S  +S IP++ +ER V+YRE+A+GM++   Y    +                    + G + +      FFY  + SF     F++  M+   + P  ++A  +    LS+ +LF+GF++  + I   W W+Y L P  + L  ++  +  DLE
Sbjct: 1049 VRRVQNIRTRLMRSLFLGVVLGTLFV---RMEETQENIYNRVSILFFSLMFGGMSG-MSSIPIVNMERGVFYREQASGMYSIPIYLFTFIVTDLPWVFLSAIIYTVPMYFISGLRLDPNG-APFFYHSFISFTTYFNFSMLAMVFATVLPTDEIAHALGGVALSISSLFAGFMIPPASIAKGWHWFYQLDPTTYPLAIVMINEFQDLE 1251          
The following BLAST results are available for this feature:
BLAST of DY259756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
AB30G_ARATH3.740e-3836.84ABC transporter G family member 30 OS=Arabidopsis ... [more]
ABCG5_DICDI7.103e-1326.40ABC transporter G family member 5 OS=Dictyostelium... [more]
ABCGI_DICDI1.582e-1223.53ABC transporter G family member 18 OS=Dictyosteliu... [more]
ABCG6_DICDI2.067e-1222.50ABC transporter G family member 6 OS=Dictyostelium... [more]
AB20G_ARATH2.285e-1124.27ABC transporter G family member 20 OS=Arabidopsis ... [more]
ABCG2_DICDI6.648e-1123.56ABC transporter G family member 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259756 ID=DY259756; Name=DY259756; organism=Citrus clementina; type=EST; length=996bp
GTATTGGTCTTATTTGAGAAACCCTCAGTACAATGCTATCCGATTTGGCA
TGACTCTTGTCATTGCCATTTTCTTTGGTTTAATCTACTGGGACAAAGGA
CAGAAGACTTCCAAACAACAAGATCTGCAGAATCTTTTTGGAGCTATGTA
TTCTATTTGTATTTTCCTTGGAACCAGCAATGCCATATCCGTGATACCCG
TTATCTGCGTTGAGAGAACAGTATACTACCGTGAAAGAGCCGCAGGGATG
TTTGCTGCAATGCCTTATGCACTTGCTCAAGTAGCCGTAGAGATAATATA
TGTATCAGTTCAAAGTGTCGTGTATGTTCTTATCCTTTACGCGATGATTG
GATTCAAGTGGGAGCTGGGAAAATTCTGCTTGTTCTTCTACTTCATGTGG
GCGTCTTTTATCATTTTCACATTGTACGGAATGATGATTGTCGCATTGAC
TCCTGGCCAGCAAGTTGCTACCATTGTCTTGTCCTTCTTCCTTAGTGTAT
GGAACTTGTTCTCCGGTTTCCTCGTTGCCAGATCGGATATTCCTGTCTGG
TGGAGGTGGTACTACTGGCTTTCTCCGGTGGCTTGGAATCTGTATGGCCT
TGTGACTTGTCAAGTTGGTGACTTAGAGTCACTTGTGGAGATTCCCTGAT
GGTAATAAATACTAAAATGACAGTGAAACCATTCATCCAAGATAATTATG
ATTTCAGAAAGATTTCATTCCTGTCGTTAATACCAGCCCATTGGCTGGAT
GGCCGTGTTCCTGGTTGGGTTTGCCCATGCCCACCAAGGCATTCACCTTC
CAAAGGAAAAAAACCCACCTCAATTCTTAAAAAAGGAACAACCAACCGAA
CCCGGTGGGGAAAACAAAAGGTATCCCACTTTTTTTTTCCCTTCGAACTT
CCCCTTTTTCACTTATATAATTTACTTTCGAAACACAAAATGAAGGTTTC
AAAAGGACCTCACGCCAACAAAACAAACCAAAAAATCTCTACCGAA
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