DY259758

Overview
NameDY259758
Unique NameDY259758
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1070
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12465 contig Ccv1_Contig12465:798..1867. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY259758 vs. ExPASy Swiss-Prot
Match: MTNK_BACP2 (Methylthioribose kinase OS=Bacillus pumilus (strain SAFR-032) GN=mtnK PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 2.137e-18
Identity = 52/158 (32.91%), Postives = 79/158 (50.00%), Query Frame = 1 
Query:    1 QALIH*DLHTGSVMVTPNSTQVIDPEFAFYGPMGFDIGAFVGNLILAFFAQDGHAAEGNDRKEYKEWILRTIEETWTLFHQKFTALWHQHKDGSGEAYLPEIYNKPELQQLVQEKFMKDLF----HDTLGFGAAKMIRRIVGVAHVEDFESIKDDSKR 462
            + L+H DLHTGS+  +   T++IDPEFAFYGP GFDIG F+ NL L         A   + +  ++ +   +   W  F + F   W   K+ S EA+             V + F++  F     +  GF   +++RR +G+AH  D ++I   SKR
Sbjct:  226 ETLVHGDLHTGSIFASETETKIIDPEFAFYGPFGFDIGHFIANLFL--------NALSRENEHDQQHLFDHVVNVWATFKEVFAKAW---KEDSIEAF------------SVSDSFLETTFDRILKEATGFAGCELVRRTIGLAHAADLDAIPSPSKR 360
The following BLAST results are available for this feature:
BLAST of DY259758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MTNK_BACP22.137e-1832.91Methylthioribose kinase OS=Bacillus pumilus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YB18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259758 ID=DY259758; Name=DY259758; organism=Citrus clementina; type=EST; length=1070bp
CAAGCCCTGATACATTGAGATCTCCACACTGGCTCTGTTATGGTCACTCC
TAATTCAACTCAGGTTATAGATCCAGAATTTGCATTTTATGGACCAATGG
GTTTTGACATTGGAGCTTTTGTTGGAAACTTGATTTTGGCCTTTTTTGCC
CAAGATGGACATGCTGCTGAAGGGAATGACAGGAAAGAGTATAAGGAGTG
GATTTTGAGGACAATTGAAGAGACTTGGACTCTGTTCCACCAGAAGTTCA
CTGCACTTTGGCATCAACACAAGGATGGTTCTGGTGAGGCATACCTTCCA
GAAATTTATAACAAACCTGAGCTTCAGCAGCTTGTGCAAGAAAAATTTAT
GAAAGATCTATTCCATGACACCCTTGGATTTGGTGCTGCCAAAATGATAA
GGAGGATTGTCGGTGTAGCCCATGTTGAGGATTTTGAATCAATTAAGGAT
GATAGCAAGCGAGCAACTTGTGAGCGGCAAGCTCTCGAACTGGCAAAGTT
GCTTCTCAAAGAAAGGCGGAATTTCCAGGCCATCACTGAAGTGGTCTCAG
CGATTCGGAAGCTCCATGCGTAAATTAGTGAATTTTAATGGTTTGCTTAA
TATAGTAAGGTTTCATCAAATAGTTGGTTTCACACTGCCGATAATATTTT
GGTTGTCGTCATTATGATGGCTTGTTTTATGTCACATAATAATAAAAATT
GTTGTTACCCTTTGACCCTAAAAAAAAAAAAAAAAAAAAAACCCCACTTT
TCTTGTACCAAGTTGGCAATTAAAAAAAACCATTGCTTTTCAAATTTTTT
GCACGAACCGGGCCCCTATCACGTCAAAAAAAAATCCTTTTTTTCCCCCC
CCCCTGAAATCCCCCTAAAATGAGTCCCAATTAAAAGGGCCCAAACCTGT
TTCCCGGGCCCCCTTGGGCCCCTGTCTTCCAAAACCTCTGAAGGTTACTT
TTTGCCCCAAAAAAAAAAAAATTCCCCCCCTGTTAAAAAAAAACCCCCCC
CGCCCCCCAAAATGAAAACCTGGCATTTTTTTTCTCAACCCCGGGTTTAA
CCCACCCCCCATTTTTTTTG
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