DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBM (30S ribosomal protein S11 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKTAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBK (30S ribosomal protein S11 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBH (30S ribosomal protein S11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB6 (30S ribosomal protein S11 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB1 (30S ribosomal protein S11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpsK PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13
Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HIK   NN+ VT+TDS GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITOC (30S ribosomal protein S11 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S    HI    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR+ + MG+K++ VRVKG    ++     ++   GF        +  I D T  PHNGCR PKKRR+
Sbjct:   15 SDGIAHIHASFNNTIVTITDRQGNTLAWATSGG-SGFRGSRKSTPFAAQVAAEKAGRIVQEMGMKNLEVRVKGPGPGRESAARSLN-NVGF-------KVTNIADITPIPHNGCRPPKKRRV 127          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB8 (30S ribosomal protein S11 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH +   HIK   NN+ VT+TD+ GN    +S+G L   +G  K + +AA+  AE   ++A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   15 RKNVEHGA--AHIKSTFNNSIVTLTDAVGNALSWSSAGALG-FRGSRKSTPFAAQMAAETAAKVAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A+SG     +G  K + +AA+  AE+ G  A++ GLK++ VRVKG       R++ +    G         I +IED T  PHNGCR PKKRR+
Sbjct:   25 HVHASFNNTIITITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAENAGNAAKDYGLKNLEVRVKGPG---PGRESSIRALNGCGYK-----ITHIEDVTPIPHNGCRPPKKRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.250e-13
Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI    NNT VT++D +GN    A+SG +   KG  K + +AA+  AEH GR A   G+K++ VRVKG    +      ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   22 HIHASFNNTIVTISDRQGNALSWATSGGVG-FKGSRKSTPFAAQVAAEHAGRAALEYGVKNLEVRVKGPGPGRDSAVRALN-ATGF-------KITSITDVTPIPHNGCRPPKKRRI 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITEC (30S ribosomal protein S11 OS=Nitrosomonas eutropha (strain C91) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI    NNT VT++D +GN    A+SG +   KG  K + +AA+  AEH GR A   G+K++ +RVKG    +      ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   22 HIHASFNNTIVTISDRQGNALSWATSGGVG-FKGSRKSTPFAAQVAAEHAGRAALEYGVKNLEIRVKGPGPGRDSAVRALN-ATGF-------KITSITDVTPVPHNGCRPPKKRRI 129          
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_CLOBM5.423e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_CLOBK5.423e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_CLOBH5.423e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_CLOB65.423e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_CLOB15.423e-1340.6330S ribosomal protein S11 OS=Clostridium botulinum... [more]
RS11_NITOC7.082e-1338.5230S ribosomal protein S11 OS=Nitrosococcus oceani ... [more]
RS11_CLOB87.082e-1339.0630S ribosomal protein S11 OS=Clostridium beijerinc... [more]
RS11_ALCBS7.082e-1339.3230S ribosomal protein S11 OS=Alcanivorax borkumens... [more]
RS11_NITEU9.250e-1341.8830S ribosomal protein S11 OS=Nitrosomonas europaea... [more]
RS11_NITEC1.208e-1241.0330S ribosomal protein S11 OS=Nitrosomonas eutropha... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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