DY259765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBM (30S ribosomal protein S11 OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=rpsK PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HIK NN+ VT+TDS GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKTAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBK (30S ribosomal protein S11 OS=Clostridium botulinum (strain Okra / Type B1) GN=rpsK PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HIK NN+ VT+TDS GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOBH (30S ribosomal protein S11 OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=rpsK PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HIK NN+ VT+TDS GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB6 (30S ribosomal protein S11 OS=Clostridium botulinum (strain 657 / Type Ba4) GN=rpsK PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HIK NN+ VT+TDS GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB1 (30S ribosomal protein S11 OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=rpsK PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.423e-13 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HIK NN+ VT+TDS GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIKSTFNNSIVTITDSVGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITOC (30S ribosomal protein S11 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rpsK PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13 Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S HI NNT VT+TD +GN A+SG +G K + +AA+ AE GR+ + MG+K++ VRVKG ++ ++ GF + I D T PHNGCR PKKRR+ Sbjct: 15 SDGIAHIHASFNNTIVTITDRQGNTLAWATSGG-SGFRGSRKSTPFAAQVAAEKAGRIVQEMGMKNLEVRVKGPGPGRESAARSLN-NVGF-------KVTNIADITPIPHNGCRPPKKRRV 127
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOB8 (30S ribosomal protein S11 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rpsK PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13 Identity = 50/128 (39.06%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH + HIK NN+ VT+TD+ GN +S+G L +G K + +AA+ AE ++A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 15 RKNVEHGA--AHIKSTFNNSIVTLTDAVGNALSWSSAGALG-FRGSRKSTPFAAQMAAETAAKVAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_ALCBS (30S ribosomal protein S11 OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=rpsK PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.082e-13 Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT +T+TD +GN A+SG +G K + +AA+ AE+ G A++ GLK++ VRVKG R++ + G I +IED T PHNGCR PKKRR+ Sbjct: 25 HVHASFNNTIITITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAENAGNAAKDYGLKNLEVRVKGPG---PGRESSIRALNGCGYK-----ITHIEDVTPIPHNGCRPPKKRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITEU (30S ribosomal protein S11 OS=Nitrosomonas europaea GN=rpsK PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.250e-13 Identity = 49/117 (41.88%), Postives = 63/117 (53.85%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 HI NNT VT++D +GN A+SG + KG K + +AA+ AEH GR A G+K++ VRVKG + ++ GF I I D T PHNGCR PKKRRI Sbjct: 22 HIHASFNNTIVTISDRQGNALSWATSGGVG-FKGSRKSTPFAAQVAAEHAGRAALEYGVKNLEVRVKGPGPGRDSAVRALN-ATGF-------KITSITDVTPIPHNGCRPPKKRRI 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITEC (30S ribosomal protein S11 OS=Nitrosomonas eutropha (strain C91) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12 Identity = 48/117 (41.03%), Postives = 63/117 (53.85%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 HI NNT VT++D +GN A+SG + KG K + +AA+ AEH GR A G+K++ +RVKG + ++ GF I I D T PHNGCR PKKRRI Sbjct: 22 HIHASFNNTIVTISDRQGNALSWATSGGVG-FKGSRKSTPFAAQVAAEHAGRAALEYGVKNLEIRVKGPGPGRDSAVRALN-ATGF-------KITSITDVTPVPHNGCRPPKKRRI 129 The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bpback to top |