DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PSYA2 (30S ribosomal protein S11 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S    HI    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  G+ A+  G+K++ V VKG    ++     +       NS        I D T  PHNGCR PKKRR+
Sbjct:   17 SEGIAHIHASFNNTIVTITDRQGNALAWATSGG-QGFRGSRKSTPFAAQVAAEVAGKAAQEYGVKNIDVLVKGPGPGRESAVRALGALGYKVNS--------ISDVTPIPHNGCRAPKKRRV 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PELCD (30S ribosomal protein S11 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI+   NNT VT+TD  GN    ++ G +   KG  K + +AA+  AE   + A   GL+SV VRVKG      +  A+ +      N      I  I+D T  PHNGCR PK+RR+
Sbjct:   24 HIQATFNNTIVTITDIAGNVISWSTCGTM-NFKGSRKSTPFAAQIAAEDAAKKAMEHGLRSVEVRVKGPG--SGRESALRALSSAGLN------ISVIKDVTPIPHNGCRPPKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCUA (30S ribosomal protein S11 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  161 TGPSQFGQFPRY----NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            TGP + GQ  R     NV H +   HIK   NNT VT+TD +GN    ASSG +   KG  K + +AA+  AE+  R A+  G++ V V VKG      +  AI S +           +  I D T +PHNG R PK+RR+
Sbjct:    9 TGPKK-GQKTRRREKKNVPHGA--AHIKSTFNNTIVTITDPQGNVIAWASSGHV-GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKG--PGSGRETAIRSLQAAGLE------VGAISDVTPQPHNGVRPPKRRRV 138          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCMM (30S ribosomal protein S11 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 2
Query:  161 TGPSQFGQFPRY----NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            TGP + GQ  R     NV H +   HIK   NNT VT+TD +GN    ASSG +   KG  K + +AA+  AE+  R A+  G++ V V VKG      +  AI S +           +  I D T +PHNG R PK+RR+
Sbjct:    9 TGPKK-GQKTRRREKKNVPHGA--AHIKSTFNNTIVTITDPQGNVIAWASSGHV-GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKG--PGSGRETAIRSLQAAGLE------VGAISDVTPQPHNGVRPPKRRRV 138          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METPP (30S ribosomal protein S11 OS=Methylibium petroleiphilum (strain PM1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 46/125 (36.80%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKK---KRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S    H+    NNT +T+TD +GN    ASSG     KG  K + +AA+  AE  GR A++ G+K++ V +KG    ++   +  A +  R           IV I D T  PHNGCR  K+RRI
Sbjct:   21 SDGVAHVHASFNNTIITITDRQGNALAWASSGG-QGFKGSRKSTPFAAQVAAEVAGRAAQDQGIKNLEVEIKGPGPGRESSVRALAALGIR-----------IVSISDVTPVPHNGCRPQKRRRI 133          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MAGSM (30S ribosomal protein S11 OS=Magnetococcus sp. (strain MC-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            +S   HI    NNT +T+TD+ GN     S+G     KG  K + +AA+  AE+ G+ A + G++++ VR+KG    ++     ++   GF        I +++D T  PHNGCR PK+RR+
Sbjct:   19 ASGIAHIHSTFNNTLITITDTHGNSISWGSAGA-QGFKGSRKSTPFAAQMAAENAGKKAMDHGMRNLEVRLKGPGSGRESALRALA-AIGFN-------ISHVQDVTPIPHNGCRPPKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_FRASN (30S ribosomal protein S11 OS=Frankia sp. (strain EAN1pec) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  155 RFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R  G  +  +  + NV H     HIK   NNT V++TD  GN    AS+G +   KG  K + +AA+  AE+  R A+  G++ V V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:    6 RAAGVKKVRRKEKKNVAHGH--AHIKSTFNNTIVSITDPSGNVISWASAGHVG-FKGSRKSTPFAAQMAAENAARKAQEHGMRKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAIQDVTPTPHNGCRPPKRRRV 134          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_FRAAA (30S ribosomal protein S11 OS=Frankia alni (strain ACN14a) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 2
Query:  155 RFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R  G  +  +  + NV H     HIK   NNT V++TD  GN    AS+G +   KG  K + +AA+  AE+  R A+  G++ V V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:    6 RAAGAKKVRRKEKKNVAHGH--AHIKSTFNNTIVSITDPTGNVISWASAGHVG-FKGSRKSTPFAAQMAAENAARKAQEHGMRKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAIQDVTPTPHNGCRPPKRRRV 134          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_EXISA (30S ribosomal protein S11 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VHI+   NNT +T+TD++GN    A+SG L   KG  K + +AA+  AE   ++A + G+++V V VKG       R+A +   +          +  I D T  PHNGCR PK+RR+
Sbjct:   23 VHIRSTFNNTIITITDTQGNAISWATSGNLG-FKGSRKSTPFAAQMAAETAAKVAMDNGMRTVEVNVKGPG---AGREAAIRALQATGLE-----VTAIRDVTPVPHNGCRPPKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CELJU (30S ribosomal protein S11 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsK PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11
Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  G  A+  GLK++ V VKG    ++     ++   G+        I  I D T  PHNGCR PKKRR+
Sbjct:   24 HIHASFNNTIVTITDRQGNALAWATSGG-SGFRGSRKSTPFAAQVAAERAGEAAKEYGLKNLDVEVKGPGPGRESAVRALN-NVGYK-------ITNITDVTPIPHNGCRPPKKRRV 131          
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_PSYA23.886e-1136.8930S ribosomal protein S11 OS=Psychrobacter arcticu... [more]
RS11_PELCD3.886e-1138.4630S ribosomal protein S11 OS=Pelobacter carbinolic... [more]
RS11_MYCUA3.886e-1138.7330S ribosomal protein S11 OS=Mycobacterium ulceran... [more]
RS11_MYCMM3.886e-1138.7330S ribosomal protein S11 OS=Mycobacterium marinum... [more]
RS11_METPP3.886e-1136.8030S ribosomal protein S11 OS=Methylibium petroleip... [more]
RS11_MAGSM3.886e-1134.4330S ribosomal protein S11 OS=Magnetococcus sp. (st... [more]
RS11_FRASN3.886e-1135.7130S ribosomal protein S11 OS=Frankia sp. (strain E... [more]
RS11_FRAAA3.886e-1135.7130S ribosomal protein S11 OS=Frankia alni (strain ... [more]
RS11_EXISA3.886e-1137.2930S ribosomal protein S11 OS=Exiguobacterium sp. (... [more]
RS11_CELJU3.886e-1138.4630S ribosomal protein S11 OS=Cellvibrio japonicus ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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