DY259765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PSYA2 (30S ribosomal protein S11 OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 45/122 (36.89%), Postives = 61/122 (50.00%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S HI NNT VT+TD +GN A+SG +G K + +AA+ AE G+ A+ G+K++ V VKG ++ + NS I D T PHNGCR PKKRR+ Sbjct: 17 SEGIAHIHASFNNTIVTITDRQGNALAWATSGG-QGFRGSRKSTPFAAQVAAEVAGKAAQEYGVKNIDVLVKGPGPGRESAVRALGALGYKVNS--------ISDVTPIPHNGCRAPKKRRV 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PELCD (30S ribosomal protein S11 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 HI+ NNT VT+TD GN ++ G + KG K + +AA+ AE + A GL+SV VRVKG + A+ + N I I+D T PHNGCR PK+RR+ Sbjct: 24 HIQATFNNTIVTITDIAGNVISWSTCGTM-NFKGSRKSTPFAAQIAAEDAAKKAMEHGLRSVEVRVKGPG--SGRESALRALSSAGLN------ISVIKDVTPIPHNGCRPPKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCUA (30S ribosomal protein S11 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 2 Query: 161 TGPSQFGQFPRY----NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 TGP + GQ R NV H + HIK NNT VT+TD +GN ASSG + KG K + +AA+ AE+ R A+ G++ V V VKG + AI S + + I D T +PHNG R PK+RR+ Sbjct: 9 TGPKK-GQKTRRREKKNVPHGA--AHIKSTFNNTIVTITDPQGNVIAWASSGHV-GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKG--PGSGRETAIRSLQAAGLE------VGAISDVTPQPHNGVRPPKRRRV 138
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCMM (30S ribosomal protein S11 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 55/142 (38.73%), Postives = 73/142 (51.41%), Query Frame = 2 Query: 161 TGPSQFGQFPRY----NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 TGP + GQ R NV H + HIK NNT VT+TD +GN ASSG + KG K + +AA+ AE+ R A+ G++ V V VKG + AI S + + I D T +PHNG R PK+RR+ Sbjct: 9 TGPKK-GQKTRRREKKNVPHGA--AHIKSTFNNTIVTITDPQGNVIAWASSGHV-GFKGSRKSTPFAAQLAAENAARKAQEHGVRKVDVFVKG--PGSGRETAIRSLQAAGLE------VGAISDVTPQPHNGVRPPKRRRV 138
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METPP (30S ribosomal protein S11 OS=Methylibium petroleiphilum (strain PM1) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 46/125 (36.80%), Postives = 64/125 (51.20%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKK---KRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S H+ NNT +T+TD +GN ASSG KG K + +AA+ AE GR A++ G+K++ V +KG ++ + A + R IV I D T PHNGCR K+RRI Sbjct: 21 SDGVAHVHASFNNTIITITDRQGNALAWASSGG-QGFKGSRKSTPFAAQVAAEVAGRAAQDQGIKNLEVEIKGPGPGRESSVRALAALGIR-----------IVSISDVTPVPHNGCRPQKRRRI 133
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MAGSM (30S ribosomal protein S11 OS=Magnetococcus sp. (strain MC-1) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 +S HI NNT +T+TD+ GN S+G KG K + +AA+ AE+ G+ A + G++++ VR+KG ++ ++ GF I +++D T PHNGCR PK+RR+ Sbjct: 19 ASGIAHIHSTFNNTLITITDTHGNSISWGSAGA-QGFKGSRKSTPFAAQMAAENAGKKAMDHGMRNLEVRLKGPGSGRESALRALA-AIGFN-------ISHVQDVTPIPHNGCRPPKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_FRASN (30S ribosomal protein S11 OS=Frankia sp. (strain EAN1pec) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 2 Query: 155 RFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R G + + + NV H HIK NNT V++TD GN AS+G + KG K + +AA+ AE+ R A+ G++ V V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 6 RAAGVKKVRRKEKKNVAHGH--AHIKSTFNNTIVSITDPSGNVISWASAGHVG-FKGSRKSTPFAAQMAAENAARKAQEHGMRKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAIQDVTPTPHNGCRPPKRRRV 134
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_FRAAA (30S ribosomal protein S11 OS=Frankia alni (strain ACN14a) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 50/140 (35.71%), Postives = 70/140 (50.00%), Query Frame = 2 Query: 155 RFTGPSQFGQFPRYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R G + + + NV H HIK NNT V++TD GN AS+G + KG K + +AA+ AE+ R A+ G++ V V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 6 RAAGAKKVRRKEKKNVAHGH--AHIKSTFNNTIVSITDPTGNVISWASAGHVG-FKGSRKSTPFAAQMAAENAARKAQEHGMRKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAIQDVTPTPHNGCRPPKRRRV 134
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_EXISA (30S ribosomal protein S11 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2 Query: 221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 VHI+ NNT +T+TD++GN A+SG L KG K + +AA+ AE ++A + G+++V V VKG R+A + + + I D T PHNGCR PK+RR+ Sbjct: 23 VHIRSTFNNTIITITDTQGNAISWATSGNLG-FKGSRKSTPFAAQMAAETAAKVAMDNGMRTVEVNVKGPG---AGREAAIRALQATGLE-----VTAIRDVTPVPHNGCRPPKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CELJU (30S ribosomal protein S11 OS=Cellvibrio japonicus (strain Ueda107) GN=rpsK PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.886e-11 Identity = 45/117 (38.46%), Postives = 61/117 (52.14%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 HI NNT VT+TD +GN A+SG +G K + +AA+ AE G A+ GLK++ V VKG ++ ++ G+ I I D T PHNGCR PKKRR+ Sbjct: 24 HIHASFNNTIVTITDRQGNALAWATSGG-SGFRGSRKSTPFAAQVAAERAGEAAKEYGLKNLDVEVKGPGPGRESAVRALN-NVGYK-------ITNITDVTPIPHNGCRPPKKRRV 131 The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bpback to top |