DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METCA (30S ribosomal protein S11 OS=Methylococcus capsulatus GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12
Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S    HI    NNT +T+TD KGN    AS+G     +G  K + +AA+  AE  G +A+  G+K++ V V G      +  A+ S    GF        IV + DTT  PHNGCR PKKRR+
Sbjct:   16 SDGIAHISASFNNTIITITDRKGNALSWASAGA-SGFRGSRKSTPFAAQVAAEKAGAVAKEYGIKNLDVHVTGPG--PGRESAVRSLNALGFK-------IVNVVDTTPLPHNGCRPPKKRRV 128          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITMU (30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     KG  K + +AA+  AE  GR A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEQAGRAAQEYGVKNLEVRIKGPGPGRESAVRALN-AAGF-------KITSISDVTPVPHNGCRPPKKRRI 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMF (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMB (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup B GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMA (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup A GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIM0 (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIG1 (30S ribosomal protein S11 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLONN (30S ribosomal protein S11 OS=Clostridium novyi (strain NT) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12
Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R N+EH     HIK   NN+ VT+TD+ GN    +S+G L   KG  K + +AA+  AE     A   GLKS+ V VKG      +  AI S +           I  I+D T  PHNGCR PK+RR+
Sbjct:   15 RKNIEHGC--AHIKSTFNNSIVTITDAVGNALSWSSAGALG-FKGSRKSTPFAAQMAAETAATAAMEHGLKSIEVYVKGPG--AGREAAIRSLQAAGLE------ITLIKDVTPIPHNGCRPPKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURXL (30S ribosomal protein S11 OS=Burkholderia xenovorans (strain LB400) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   26 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPVPHNGCRPPKRRRI 134          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133          
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_METCA1.208e-1239.0230S ribosomal protein S11 OS=Methylococcus capsula... [more]
RS11_NITMU1.578e-1240.1730S ribosomal protein S11 OS=Nitrosospira multifor... [more]
RS11_NEIMF1.578e-1238.5230S ribosomal protein S11 OS=Neisseria meningitidi... [more]
RS11_NEIMB1.578e-1238.5230S ribosomal protein S11 OS=Neisseria meningitidi... [more]
RS11_NEIMA1.578e-1238.5230S ribosomal protein S11 OS=Neisseria meningitidi... [more]
RS11_NEIM01.578e-1238.5230S ribosomal protein S11 OS=Neisseria meningitidi... [more]
RS11_NEIG11.578e-1238.5230S ribosomal protein S11 OS=Neisseria gonorrhoeae... [more]
RS11_CLONN1.578e-1239.8430S ribosomal protein S11 OS=Clostridium novyi (st... [more]
RS11_BURXL2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia xenovora... [more]
RS11_BURVG2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia vietnami... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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