DY259765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METCA (30S ribosomal protein S11 OS=Methylococcus capsulatus GN=rpsK PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.208e-12 Identity = 48/123 (39.02%), Postives = 64/123 (52.03%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S HI NNT +T+TD KGN AS+G +G K + +AA+ AE G +A+ G+K++ V V G + A+ S GF IV + DTT PHNGCR PKKRR+ Sbjct: 16 SDGIAHISASFNNTIITITDRKGNALSWASAGA-SGFRGSRKSTPFAAQVAAEKAGAVAKEYGIKNLDVHVTGPG--PGRESAVRSLNALGFK-------IVNVVDTTPLPHNGCRPPKKRRV 128
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NITMU (30S ribosomal protein S11 OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT VT+TD +GN A+SG KG K + +AA+ AE GR A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEQAGRAAQEYGVKNLEVRIKGPGPGRESAVRALN-AAGF-------KITSISDVTPVPHNGCRPPKKRRI 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMF (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMB (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup B GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIMA (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup A GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIM0 (30S ribosomal protein S11 OS=Neisseria meningitidis serogroup C (strain 053442) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_NEIG1 (30S ribosomal protein S11 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 47/122 (38.52%), Postives = 66/122 (54.10%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 19 SEGIVHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKVAQEYGVKNLEVRIKGPGPGRESSVRALNAL-GFK-------ITSITDVTPLPHNGCRPPKKRRI 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLONN (30S ribosomal protein S11 OS=Clostridium novyi (strain NT) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.578e-12 Identity = 51/128 (39.84%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R N+EH HIK NN+ VT+TD+ GN +S+G L KG K + +AA+ AE A GLKS+ V VKG + AI S + I I+D T PHNGCR PK+RR+ Sbjct: 15 RKNIEHGC--AHIKSTFNNSIVTITDAVGNALSWSSAGALG-FKGSRKSTPFAAQMAAETAATAAMEHGLKSIEVYVKGPG--AGREAAIRSLQAAGLE------ITLIKDVTPIPHNGCRPPKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURXL (30S ribosomal protein S11 OS=Burkholderia xenovorans (strain LB400) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12 Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 Query: 221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI Sbjct: 26 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPVPHNGCRPPKRRRI 134
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURVG (30S ribosomal protein S11 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=rpsK PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12 Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 Query: 221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 VH+ NNT +T+TD +GN A+SG KG K + +AA+ AE GR+A G+K++ VR+KG R++ + G I I D T PHNGCR PK+RRI Sbjct: 25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133 The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bpback to top |