DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURM1 (30S ribosomal protein S11 OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURCM (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURCJ (30S ribosomal protein S11 OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURCH (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain HI2424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURCC (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain MC0-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURCA (30S ribosomal protein S11 OS=Burkholderia cenocepacia (strain AU 1054) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BURA4 (30S ribosomal protein S11 OS=Burkholderia ambifaria (strain MC40-6) GN=rpsK PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.061e-12
Identity = 46/118 (38.98%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VH+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A   G+K++ VR+KG       R++ +    G         I  I D T  PHNGCR PK+RRI
Sbjct:   25 VHVHASFNNTIITITDRQGNALAWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKG---PGPGRESAVRALHGLGIK-----ITAISDVTPIPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RALSO (30S ribosomal protein S11 OS=Ralstonia solanacearum GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   26 HVHASFNNTIITITDRQGNALSWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNNLGI-------KIQVIEDVTPVPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RALPJ (30S ribosomal protein S11 OS=Ralstonia pickettii (strain 12J) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   26 HVHASFNNTIITITDRQGNALSWATSGG-QGFKGSRKSTPFAAQVAAESAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNNLGI-------KIQLIEDVTPVPHNGCRPPKRRRI 133
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RALEJ (30S ribosomal protein S11 OS=Ralstonia eutropha (strain JMP134) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A++G     KG  K + +AA+  AE+ GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_BURM12.061e-1238.9830S ribosomal protein S11 OS=Burkholderia multivor... [more]
RS11_BURCM2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_BURCJ2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia cepacia ... [more]
RS11_BURCH2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCC2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURCA2.061e-1238.9830S ribosomal protein S11 OS=Burkholderia cenocepa... [more]
RS11_BURA42.061e-1238.9830S ribosomal protein S11 OS=Burkholderia ambifari... [more]
RS11_RALSO2.691e-1238.9830S ribosomal protein S11 OS=Ralstonia solanacearu... [more]
RS11_RALPJ2.691e-1238.9830S ribosomal protein S11 OS=Ralstonia pickettii (... [more]
RS11_RALEJ2.691e-1238.1430S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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