DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RALEH (30S ribosomal protein S11 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A++G     KG  K + +AA+  AE+ GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CUPTR (30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A++G     KG  K + +AA+  AE+ GR+A++ G+K++ VR+KG      +  A+ +    G         I  IED T  PHNGCR PK+RRI
Sbjct:   25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RHOOB (30S ribosomal protein S11 OS=Rhodococcus opacus (strain B4) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  149 EKRFTGPSQFGQFPRY---NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            + R TGP +  +  R    NV H +   HIK   NNT V++TD  GN    ASSG +   KG  K + +AA+  AE+  R A+  G+K V V VKG      +  AI S +           +  I D T +PHNGCR PK+RR+
Sbjct:    4 KSRSTGPKKTQKARRRDKKNVPHGA--AHIKSTFNNTIVSITDPAGNVISWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 137          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOK5 (30S ribosomal protein S11 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HI+   NN+ VT+TD+ GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETSAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOK1 (30S ribosomal protein S11 OS=Clostridium kluyveri (strain NBRC 12016) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12
Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVEH     HI+   NN+ VT+TD+ GN    AS+G L   +G  K + +AA+  AE   + A   GLKS+ V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETSAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RUBXD (30S ribosomal protein S11 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRR 571
            S+  VHIK   NNT ++VTD +GN     S+G +   KG  K + YAA+ TAE     A   G+K V ++VKG  +   +  A  +F+           ++ I+D T +PHNGCR PK+RR
Sbjct:   23 STAVVHIKSSFNNTIISVTDQEGNVIAWESAGSMG-FKGSRKSTPYAAQMTAESAANKAMEHGVKRVDIQVKG--HGSGRDMAARTFQAMGIE------VLSIKDVTGQPHNGCRPPKRRR 134          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RHOSR (30S ribosomal protein S11 OS=Rhodococcus sp. (strain RHA1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12
Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 2
Query:  149 EKRFTGPSQFGQFPRY---NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            + R TGP +  +  R    NV H +   HIK   NNT V++TD  GN    ASSG +   KG  K + +AA+  AE+  R A+  G+K V V VKG      +  AI S +           +  I D T +PHNGCR PK+RR+
Sbjct:    4 KSRGTGPKKTQKARRRDKKNVPHGA--AHIKSTFNNTIVSITDPAGNVISWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 137          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCVP (30S ribosomal protein S11 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 50/126 (39.68%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  197 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            NV H +   HIK   NNT V++TD +GN    ASSG +   KG  K + +AA+  AE+  R A+  G+K V V VKG      +  AI S +           +  I D T +PHNGCR PK+RR+
Sbjct:   23 NVPHGA--AHIKSTFNNTIVSITDPQGNVIAWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAISDVTPQPHNGCRPPKRRRV 137          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCS2 (30S ribosomal protein S11 OS=Mycobacterium smegmatis GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 50/126 (39.68%), Postives = 67/126 (53.17%), Query Frame = 2
Query:  197 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            NV H +   HIK   NNT V++TD +GN    ASSG +   KG  K + +AA+  AE+  R A+  G+K V V VKG      +  AI S +           +  I D T +PHNGCR PK+RR+
Sbjct:   24 NVPHGA--AHIKSTFNNTIVSITDPQGNVIAWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 138          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12
Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            +S   H+    NNT VT+TD++GN    +S+G +   KG  K + YAA+  AE  G+ A   G+K++ V+V G    ++   +A+ S   GF        I  I+D T  PHNGCR PK+RR+
Sbjct:   17 TSGVAHVSASFNNTMVTITDAQGNAISWSSAGHMG-FKGSRKSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSGPGSGRESALRALQSV--GFT-------ITTIQDVTPIPHNGCRPPKRRRV 129          
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_RALEH2.691e-1238.1430S ribosomal protein S11 OS=Ralstonia eutropha (s... [more]
RS11_CUPTR2.691e-1238.1430S ribosomal protein S11 OS=Cupriavidus taiwanens... [more]
RS11_RHOOB3.515e-1237.9330S ribosomal protein S11 OS=Rhodococcus opacus (s... [more]
RS11_CLOK53.515e-1239.0630S ribosomal protein S11 OS=Clostridium kluyveri ... [more]
RS11_CLOK13.515e-1239.0630S ribosomal protein S11 OS=Clostridium kluyveri ... [more]
RS11_RUBXD4.591e-1238.0230S ribosomal protein S11 OS=Rubrobacter xylanophi... [more]
RS11_RHOSR4.591e-1237.9330S ribosomal protein S11 OS=Rhodococcus sp. (stra... [more]
RS11_MYCVP5.996e-1239.6830S ribosomal protein S11 OS=Mycobacterium vanbaal... [more]
RS11_MYCS25.996e-1239.6830S ribosomal protein S11 OS=Mycobacterium smegmat... [more]
RS11_MARMM5.996e-1237.4030S ribosomal protein S11 OS=Maricaulis maris (str... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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