DY259765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RALEH (30S ribosomal protein S11 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12 Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT +T+TD +GN A++G KG K + +AA+ AE+ GR+A++ G+K++ VR+KG + A+ + G I IED T PHNGCR PK+RRI Sbjct: 25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CUPTR (30S ribosomal protein S11 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.691e-12 Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT +T+TD +GN A++G KG K + +AA+ AE+ GR+A++ G+K++ VR+KG + A+ + G I IED T PHNGCR PK+RRI Sbjct: 25 HVHASFNNTIITITDRQGNALSWATAGG-QGFKGSRKSTPFAAQVAAENAGRVAQDQGIKNLEVRIKG--PGPGRESAVRALNALGI-------KIAIIEDVTPIPHNGCRPPKRRRI 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RHOOB (30S ribosomal protein S11 OS=Rhodococcus opacus (strain B4) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12 Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 149 EKRFTGPSQFGQFPRY---NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 + R TGP + + R NV H + HIK NNT V++TD GN ASSG + KG K + +AA+ AE+ R A+ G+K V V VKG + AI S + + I D T +PHNGCR PK+RR+ Sbjct: 4 KSRSTGPKKTQKARRRDKKNVPHGA--AHIKSTFNNTIVSITDPAGNVISWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 137
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOK5 (30S ribosomal protein S11 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12 Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HI+ NN+ VT+TD+ GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETSAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOK1 (30S ribosomal protein S11 OS=Clostridium kluyveri (strain NBRC 12016) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.515e-12 Identity = 50/128 (39.06%), Postives = 67/128 (52.34%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVEH HI+ NN+ VT+TD+ GN AS+G L +G K + +AA+ AE + A GLKS+ V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNVEHGC--AHIRSTFNNSIVTITDAAGNTLSWASAGGLG-FRGSRKSTPFAAQMAAETSAKAAMEHGLKSIEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RUBXD (30S ribosomal protein S11 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12 Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRR 571 S+ VHIK NNT ++VTD +GN S+G + KG K + YAA+ TAE A G+K V ++VKG + + A +F+ ++ I+D T +PHNGCR PK+RR Sbjct: 23 STAVVHIKSSFNNTIISVTDQEGNVIAWESAGSMG-FKGSRKSTPYAAQMTAESAANKAMEHGVKRVDIQVKG--HGSGRDMAARTFQAMGIE------VLSIKDVTGQPHNGCRPPKRRR 134
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_RHOSR (30S ribosomal protein S11 OS=Rhodococcus sp. (strain RHA1) GN=rpsK PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.591e-12 Identity = 55/145 (37.93%), Postives = 74/145 (51.03%), Query Frame = 2 Query: 149 EKRFTGPSQFGQFPRY---NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 + R TGP + + R NV H + HIK NNT V++TD GN ASSG + KG K + +AA+ AE+ R A+ G+K V V VKG + AI S + + I D T +PHNGCR PK+RR+ Sbjct: 4 KSRGTGPKKTQKARRRDKKNVPHGA--AHIKSTFNNTIVSITDPAGNVISWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 137
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCVP (30S ribosomal protein S11 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12 Identity = 50/126 (39.68%), Postives = 67/126 (53.17%), Query Frame = 2 Query: 197 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 NV H + HIK NNT V++TD +GN ASSG + KG K + +AA+ AE+ R A+ G+K V V VKG + AI S + + I D T +PHNGCR PK+RR+ Sbjct: 23 NVPHGA--AHIKSTFNNTIVSITDPQGNVIAWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGAISDVTPQPHNGCRPPKRRRV 137
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MYCS2 (30S ribosomal protein S11 OS=Mycobacterium smegmatis GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12 Identity = 50/126 (39.68%), Postives = 67/126 (53.17%), Query Frame = 2 Query: 197 NVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 NV H + HIK NNT V++TD +GN ASSG + KG K + +AA+ AE+ R A+ G+K V V VKG + AI S + + I D T +PHNGCR PK+RR+ Sbjct: 24 NVPHGA--AHIKSTFNNTIVSITDPQGNVIAWASSGHVG-FKGSRKSTPFAAQLAAENAARKAQEHGVKKVDVFVKGPG--SGRETAIRSLQAAGLE------VGTISDVTPQPHNGCRPPKRRRV 138
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_MARMM (30S ribosomal protein S11 OS=Maricaulis maris (strain MCS10) GN=rpsK PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.996e-12 Identity = 46/123 (37.40%), Postives = 68/123 (55.28%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 +S H+ NNT VT+TD++GN +S+G + KG K + YAA+ AE G+ A G+K++ V+V G ++ +A+ S GF I I+D T PHNGCR PK+RR+ Sbjct: 17 TSGVAHVSASFNNTMVTITDAQGNAISWSSAGHMG-FKGSRKSTPYAAQMAAEDAGKKAMEHGMKTIEVKVSGPGSGRESALRALQSV--GFT-------ITTIQDVTPIPHNGCRPPKRRRV 129 The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bpback to top |