DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_COXBR (30S ribosomal protein S11 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR-NMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HIK   NNT ++V+D +GN     S+G     KG  K + Y A+  +E VGRLAR N  ++ + VRVKG      +  AI   R           ++Y+ED T  PHNGCR  KKRR+
Sbjct:   15 HIKATFNNTMISVSDPQGNVLCFRSAGG-SGFKGSRKGTPYGAQMASEEVGRLARDNFDMRRIAVRVKGPG--AGRDSAIRGLRSAGLE------VIYLEDRTPLPHNGCRPRKKRRV 123
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_COXB1 (30S ribosomal protein S11 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpsK PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.830e-12
Identity = 47/118 (39.83%), Postives = 64/118 (54.24%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLAR-NMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HIK   NNT ++V+DS+GN     S+G     KG  K + Y A+  +E VGRLAR N  ++ + VRVKG      +  AI   R           ++++ED T  PHNGCR  KKRR+
Sbjct:   15 HIKATFNNTMISVSDSQGNVLCFRSAGG-SGFKGSRKGTPYGAQMASEEVGRLARDNFDMRRIAVRVKGPG--AGRDSAIRGLRSAGLE------VIHLEDRTPLPHNGCRPRKKRRV 123
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANOP (30S ribosomal protein S11 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANOM (30S ribosomal protein S11 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANCP (30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANCB (30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris (strain B100) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANC8 (30S ribosomal protein S11 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANC5 (30S ribosomal protein S11 OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_XANAC (30S ribosomal protein S11 OS=Xanthomonas axonopodis pv. citri GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   23 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 130
[Close]
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_THIDA (30S ribosomal protein S11 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 46/117 (39.32%), Postives = 65/117 (55.56%), Query Frame = 2 
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI    NNT VT+TD +GN    A++G     KG  K + +AA+  AE+ G++A+  G+K++ VR+KG    ++     ++   GF        IV I D T  PHNGCR  KKRRI
Sbjct:   23 HIHASFNNTIVTITDRQGNALSWATAGGAG-FKGSRKSTPFAAQVAAENAGKMAQEYGVKNLEVRIKGPGPGRESTVRALN-ALGF-------KIVAISDVTPIPHNGCRPSKKRRI 130
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_COXBR7.830e-1239.8330S ribosomal protein S11 OS=Coxiella burnetii (st... [more]
RS11_COXB17.830e-1239.8330S ribosomal protein S11 OS=Coxiella burnetii (st... [more]
RS11_XANOP1.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas oryzae pv... [more]
RS11_XANOM1.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas oryzae pv... [more]
RS11_XANCP1.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas campestri... [more]
RS11_XANCB1.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas campestri... [more]
RS11_XANC81.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas campestri... [more]
RS11_XANC51.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas campestri... [more]
RS11_XANAC1.023e-1139.8330S ribosomal protein S11 OS=Xanthomonas axonopodi... [more]
RS11_THIDA1.023e-1139.3230S ribosomal protein S11 OS=Thiobacillus denitrif... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
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