DY259765
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_STRMK (30S ribosomal protein S11 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+ Sbjct: 22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_STRM5 (30S ribosomal protein S11 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11 Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT VT+TD +GN A+SG +G K + +AA+ AE GR A + G+KS+ VR+KG + A+ S G+ I I D T PHNGCR PKKRR+ Sbjct: 22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PELTS (30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11 Identity = 49/121 (40.50%), Postives = 63/121 (52.07%), Query Frame = 2 Query: 212 SEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S HIK NNT VT+TD+KGN +S+G + KG K + +AA+ AE R A GLK V V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 18 SGVAHIKSTFNNTIVTITDTKGNTISWSSAGQVG-FKGSRKSTPFAAQMAAESAAREAMEHGLKEVEVMVKGPG--AGREAAIRSLQAAGLE------VNLIKDVTPIPHNGCRPPKRRRV 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METFK (30S ribosomal protein S11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11 Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 H+ NNT +T+TD +GN A+SG KG K + +AA+ AE G+ A+ G+K++ VR+KG ++ ++ GF I I D T PHNGCR PKKRRI Sbjct: 22 HVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKAAQECGVKNLEVRIKGPGPGRESAVRALN-AVGFK-------ITSISDVTPVPHNGCRPPKKRRI 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_LARHH (30S ribosomal protein S11 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11 Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 S H+ NNT +T+TD +GN A+SG KG K + +AA+ AE G++A+ G+K++ VR+KG + ++ GF I I D T PHNGCR PKKRRI Sbjct: 18 SEGIAHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQIAAEAAGKVAQEYGVKNLEVRIKGPGPGRDSSVRALNAL-GFK-------ITSISDVTPIPHNGCRPPKKRRI 130
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_LAWIP (30S ribosomal protein S11 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11 Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 2 Query: 221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 VHI+ NNT +T TD +GN ASSG KG K + +AA+ AE R A++ G+++V + VKG ++ ++ GF + +I D T PHNGCR PK+RR+ Sbjct: 21 VHIQASFNNTIITFTDPRGNTISWASSG-QSGFKGSRKSTPFAAQVAAEQAARRAQDNGMRTVGIYVKGPGSGRESAMRAIN-AVGFK-------VAFIRDITPIPHNGCRPPKRRRV 129
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOTE (30S ribosomal protein S11 OS=Clostridium tetani GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11 Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R N+E HIK NN+ VT+TD+ GN AS+G L +G K + +AA+ AE + A GLKSV V VKG + AI S + + I+D T PHNGCR PK+RR+ Sbjct: 16 RKNIERGC--AHIKSTFNNSIVTLTDTAGNALSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSVEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_ALHEH (30S ribosomal protein S11 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11 Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 2 Query: 224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 HI NNT +T+TD +GN AS+G +G K + +AA+ +E GR A + GLK++ VRVKG ++ +A+ + N D +PI PHNGCR PKKRR+ Sbjct: 23 HINATFNNTIITITDRQGNGLAWASAGG-SGFRGSRKSTPFAAQVASERAGRAALDYGLKNLEVRVKGPGPGRESAVRALNAVGYRITNISDVSPI---------PHNGCRPPKKRRV 130
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_GRABC (30S ribosomal protein S11 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2 Query: 209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 SS H+ NNT +T++D++GN +S+G KG K + YAA+ AE GR AR G++++ + V G + A+ + + GFA I I DTT PHNGCR K+RR+ Sbjct: 19 SSGVAHVAATFNNTMITISDAQGNAIAWSSAGA-QGFKGSRKSTPYAAQVAAEDAGRKAREHGMETLEIEVSGPG--SGRESALRALQAVGFA-------ITAIRDTTPIPHNGCRPRKRRRV 131
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BACHD (30S ribosomal protein S11 OS=Bacillus halodurans GN=rpsK PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11 Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 2 Query: 191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574 R NVE + HI+ NNT VT+TD GN AS+G L KG K + +AA+ AE + A G+KS+ V VKG + AI S + A + N I+D T PHNGCR PK+RR+ Sbjct: 13 RKNVE--TGVAHIRSTFNNTIVTITDPHGNAISWASAGALG-FKGSRKSTPFAAQMAAETAAKAAMEHGMKSIEVSVKGPG--AGREAAIRSLQ---AVGLEVN---MIKDVTPVPHNGCRPPKRRRV 129 The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 170
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Sequences
The
following sequences are available for this feature:
EST sequence >DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bpback to top |