DY259765

Overview
NameDY259765
Unique NameDY259765
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length832
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_STRMK (30S ribosomal protein S11 OS=Stenotrophomonas maltophilia (strain K279a) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_STRM5 (30S ribosomal protein S11 OS=Stenotrophomonas maltophilia (strain R551-3) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 47/118 (39.83%), Postives = 63/118 (53.39%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT VT+TD +GN    A+SG     +G  K + +AA+  AE  GR A + G+KS+ VR+KG      +  A+ S    G+        I  I D T  PHNGCR PKKRR+
Sbjct:   22 HVHASFNNTIVTITDRQGNALSWATSGGAG-FRGSRKSTPFAAQVAAEKAGRAALDYGVKSLEVRIKG--PGPGRESAVRSLNNVGY-------KITNIIDVTPIPHNGCRPPKKRRV 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_PELTS (30S ribosomal protein S11 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 49/121 (40.50%), Postives = 63/121 (52.07%), Query Frame = 2
Query:  212 SEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S   HIK   NNT VT+TD+KGN    +S+G +   KG  K + +AA+  AE   R A   GLK V V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   18 SGVAHIKSTFNNTIVTITDTKGNTISWSSAGQVG-FKGSRKSTPFAAQMAAESAAREAMEHGLKEVEVMVKGPG--AGREAAIRSLQAAGLE------VNLIKDVTPIPHNGCRPPKRRRV 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_METFK (30S ribosomal protein S11 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 45/117 (38.46%), Postives = 63/117 (53.85%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G+ A+  G+K++ VR+KG    ++     ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   22 HVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQVAAEAAGKAAQECGVKNLEVRIKGPGPGRESAVRALN-AVGFK-------ITSISDVTPVPHNGCRPPKKRRI 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_LARHH (30S ribosomal protein S11 OS=Laribacter hongkongensis (strain HLHK9) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.023e-11
Identity = 46/122 (37.70%), Postives = 64/122 (52.46%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            S    H+    NNT +T+TD +GN    A+SG     KG  K + +AA+  AE  G++A+  G+K++ VR+KG    +      ++   GF        I  I D T  PHNGCR PKKRRI
Sbjct:   18 SEGIAHVHASFNNTIITITDRQGNALSWATSGGAG-FKGSRKSTPFAAQIAAEAAGKVAQEYGVKNLEVRIKGPGPGRDSSVRALNAL-GFK-------ITSISDVTPIPHNGCRPPKKRRI 130          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_LAWIP (30S ribosomal protein S11 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 44/118 (37.29%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  221 VHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            VHI+   NNT +T TD +GN    ASSG     KG  K + +AA+  AE   R A++ G+++V + VKG    ++     ++   GF        + +I D T  PHNGCR PK+RR+
Sbjct:   21 VHIQASFNNTIITFTDPRGNTISWASSG-QSGFKGSRKSTPFAAQVAAEQAARRAQDNGMRTVGIYVKGPGSGRESAMRAIN-AVGFK-------VAFIRDITPIPHNGCRPPKRRRV 129          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_CLOTE (30S ribosomal protein S11 OS=Clostridium tetani GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 50/128 (39.06%), Postives = 66/128 (51.56%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R N+E      HIK   NN+ VT+TD+ GN    AS+G L   +G  K + +AA+  AE   + A   GLKSV V VKG      +  AI S +           +  I+D T  PHNGCR PK+RR+
Sbjct:   16 RKNIERGC--AHIKSTFNNSIVTLTDTAGNALSWASAGGLG-FRGSRKSTPFAAQMAAETAAKAAMEHGLKSVEVYVKGPG--SGREAAIRSLQAAGLE------VTLIKDVTPIPHNGCRPPKRRRV 132          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_ALHEH (30S ribosomal protein S11 OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.336e-11
Identity = 45/118 (38.14%), Postives = 64/118 (54.24%), Query Frame = 2
Query:  224 HIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKR-QAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            HI    NNT +T+TD +GN    AS+G     +G  K + +AA+  +E  GR A + GLK++ VRVKG    ++   +A+ +      N  D +PI         PHNGCR PKKRR+
Sbjct:   23 HINATFNNTIITITDRQGNGLAWASAGG-SGFRGSRKSTPFAAQVASERAGRAALDYGLKNLEVRVKGPGPGRESAVRALNAVGYRITNISDVSPI---------PHNGCRPPKKRRV 130          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_GRABC (30S ribosomal protein S11 OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  209 SSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFRE-GFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            SS   H+    NNT +T++D++GN    +S+G     KG  K + YAA+  AE  GR AR  G++++ + V G      +  A+ + +  GFA       I  I DTT  PHNGCR  K+RR+
Sbjct:   19 SSGVAHVAATFNNTMITISDAQGNAIAWSSAGA-QGFKGSRKSTPYAAQVAAEDAGRKAREHGMETLEIEVSGPG--SGRESALRALQAVGFA-------ITAIRDTTPIPHNGCRPRKRRRV 131          
BLAST of DY259765 vs. ExPASy Swiss-Prot
Match: RS11_BACHD (30S ribosomal protein S11 OS=Bacillus halodurans GN=rpsK PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.744e-11
Identity = 52/128 (40.62%), Postives = 68/128 (53.12%), Query Frame = 2
Query:  191 RYNVEHSSEFVHIKLMRNNTFVTVTDSKGNKRIGASSGCLPELKGGPKMSRYAAEATAEHVGRLARNMGLKSVVVRVKGFTYFKKKRQAIMSFREGFANSRDQNPIVYIEDTTRRPHNGCRLPKKRRI 574
            R NVE  +   HI+   NNT VT+TD  GN    AS+G L   KG  K + +AA+  AE   + A   G+KS+ V VKG      +  AI S +   A   + N    I+D T  PHNGCR PK+RR+
Sbjct:   13 RKNVE--TGVAHIRSTFNNTIVTITDPHGNAISWASAGALG-FKGSRKSTPFAAQMAAETAAKAAMEHGMKSIEVSVKGPG--AGREAAIRSLQ---AVGLEVN---MIKDVTPVPHNGCRPPKRRRV 129          
The following BLAST results are available for this feature:
BLAST of DY259765 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 170
Match NameE-valueIdentityDescription
RS11_STRMK1.023e-1139.8330S ribosomal protein S11 OS=Stenotrophomonas malt... [more]
RS11_STRM51.023e-1139.8330S ribosomal protein S11 OS=Stenotrophomonas malt... [more]
RS11_PELTS1.023e-1140.5030S ribosomal protein S11 OS=Pelotomaculum thermop... [more]
RS11_METFK1.023e-1138.4630S ribosomal protein S11 OS=Methylobacillus flage... [more]
RS11_LARHH1.023e-1137.7030S ribosomal protein S11 OS=Laribacter hongkongen... [more]
RS11_LAWIP1.336e-1137.2930S ribosomal protein S11 OS=Lawsonia intracellula... [more]
RS11_CLOTE1.336e-1139.0630S ribosomal protein S11 OS=Clostridium tetani GN... [more]
RS11_ALHEH1.336e-1138.1430S ribosomal protein S11 OS=Alkalilimnicola ehrli... [more]
RS11_GRABC1.744e-1136.5930S ribosomal protein S11 OS=Granulibacter bethesd... [more]
RS11_BACHD1.744e-1140.6330S ribosomal protein S11 OS=Bacillus halodurans G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YC05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259765 ID=DY259765; Name=DY259765; organism=Citrus clementina; type=EST; length=832bp
TTTATGTGCAGTGAGTGTGGAACAAAATGTTGCTGCTCCATATGCTTTAG
GTTTCAGGAATTTCATTCATTCCACAGGCCAGGGGGATGATGAAACAGGA
AGGAGTTCCAGGCCCATGGACTTTGTGAGGGGAATAGTAGAGGAAGATGA
AAAGAGATTCACGGGACCTTCTCAATTTGGTCAATTTCCTCGCTATAATG
TTGAGCACAGTTCCGAGTTTGTCCACATAAAGCTGATGCGTAATAACACC
TTTGTTACTGTGACGGATTCTAAAGGAAACAAAAGGATTGGAGCCTCTTC
TGGATGTTTGCCTGAACTGAAAGGGGGGCCAAAAATGTCTCGTTATGCTG
CCGAAGCAACTGCAGAACATGTTGGGCGTCTGGCAAGGAACATGGGTTTA
AAATCTGTAGTAGTGAGGGTGAAAGGGTTCACTTACTTTAAGAAGAAAAG
GCAAGCAATCATGAGCTTCAGAGAGGGATTTGCTAATTCTCGAGATCAGA
ATCCTATTGTATATATTGAAGACACAACTCGTCGCCCGCACAATGGGTGC
CGACTCCCAAAGAAACGCCGTATTTAAATAATGGCTAGCCAGTTTTGATA
TTTTTCACCCTAGAAAGGAACTTTTATTGATGATTATCTGAATAATTGCT
AGCCAGCTTTGACATTACCCCAGTTTGCCTTTTACTCCTTGTTTGTAAAT
GATTATCCGAATTCATAAATCTTGTTCTGAGAAGTAAGAATGTAGGTAAT
GATTATTATAACCTCTGTACCGGATTTCAAATTTTGTTCCCCAAATTTTT
GTAACCAAAATTTTCCTTTTAAATTTTTTTTT
back to top