DY259768

Overview
NameDY259768
Unique NameDY259768
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length920
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259768 vs. ExPASy Swiss-Prot
Match: CP080_RAT (UPF0468 protein C16orf80 homolog OS=Rattus norvegicus GN=Gtl3 PE=2 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 6.387e-66
Identity = 119/144 (82.64%), Postives = 131/144 (90.97%), Query Frame = 1 
Query:   70 MFKNTFQSGFLSILYSLGSKPLQIWDKEVVDGHVKRPHDEDIQSNVLEIVGPNVQSTYITCPIDPAATLGIKLPFLVMIVKNLKKYFTFEIQVLDDKNVRRRFRASNFQAVTRVKPYICTMPLRLDDGWNQIQLNLADFTRRAY 501
            MFKNTFQSGFLSILYS+GSKPLQIWDK+V +GH+KR  D DIQS VLEI G NV +TYITCP DP  TLGIKLPFLVMI+KNLKKYFTFE+QVLDDKNVRRRFRASN+Q+ TRVKP+ICTMP+RLDDGWNQIQ NL+DFTRRAY
Sbjct:    1 MFKNTFQSGFLSILYSIGSKPLQIWDKKVRNGHIKRITDNDIQSLVLEIEGTNVSTTYITCPADPKKTLGIKLPFLVMIIKNLKKYFTFEVQVLDDKNVRRRFRASNYQSTTRVKPFICTMPMRLDDGWNQIQFNLSDFTRRAY 144
The following BLAST results are available for this feature:
BLAST of DY259768 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
CP080_RAT6.387e-6682.64UPF0468 protein C16orf80 homolog OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259768 ID=DY259768; Name=DY259768; organism=Citrus clementina; type=EST; length=920bp
CGAGGACCAAACAGGTACCGGAACAGGAATCATCATCGGTTGTCTTCTTC
AAGTTGAGATTGTCCAAAGATGTTCAAGAACACATTTCAATCAGGATTCT
TGTCAATCTTATACAGCCTTGGGAGCAAACCTCTGCAAATATGGGATAAA
GAAGTTGTCGATGGTCATGTGAAACGACCTCACGATGAAGACATACAGTC
CAATGTACTTGAAATAGTTGGGCCAAATGTACAATCTACATACATTACAT
GCCCCATAGACCCAGCAGCAACTCTTGGTATAAAACTCCCATTTTTGGTT
ATGATTGTCAAGAACCTGAAGAAATATTTCACATTTGAGATTCAAGTACT
GGATGATAAAAATGTCCGTCGGCGTTTTCGAGCTTCTAACTTCCAAGCTG
TTACGCGGGTGAAGCCATATATCTGCACCATGCCACTGAGGTTGGATGAT
GGCTGGAATCAGATCCAGTTGAACCTGGCTGATTTTACCAGGAGAGCATA
TGGAACCAACTATGTTGAAACTTTACGAGTTCAGGTTCATGCAAACTGTC
GCCTCAGAAGGATATATTTCTCGGATCGCCTGTACTCGGAAGAAGAACTC
CCACCGGAATTTAAGCTGTACCTTCCAATGCAGAAAACATGACTTTCAGG
GAAGGAGAGCTTCACACTTGCAATTATTGTGATTTCAGATTCTAAATGCT
ATATGCTAATTCAGATTCTAAATGCCATATGCTATTCTTAGAAGCTGACT
CAGTTTTATCCGAGTTGTTTTTGGAAGGTTTTAATGAAATGGAAAAAAAG
AACTAAAAATATCCTAAAATTGATCCACTAACCAAATAACTAGATGGTGG
TTAACCGGTTCCTTCCCCAAATTTTTCTATGTCCATAAACAAAAGGGATC
CCTTGGCCCCTTTATGCCAT
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