DY259772

Overview
NameDY259772
Unique NameDY259772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_LACS1 (50S ribosomal protein L2 OS=Lactobacillus salivarius subsp. salivarius (strain UCC118) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.807e-15
Identity = 51/145 (35.17%), Postives = 79/145 (54.48%), Query Frame = 2
Query:  392 DINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIK 826
            D++ ++G+ +PLA + +GT+IHNIE+ PG+GG+LVR+AGTS + L +    + ++RL SG+ ++    C+ATIG V N  H    + K G   W G K    R +  +      G G G+  +    GR        P+  WG K
Sbjct:  121 DVDIKVGNTLPLANIPVGTVIHNIELKPGKGGQLVRSAGTSAQLLGK-EGKYAIIRLTSGEVRMILVTCRATIGAVGNEQHELIKVGKAGRARWAG-KRPQSRGSVMNPNDHPHGGGEGKAPV----GR------PSPMSPWGKK 253          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_DINSH (50S ribosomal protein L2 OS=Dinoroseobacter shibae (strain DFL 12) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.807e-15
Identity = 61/167 (36.53%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++  V DK++      DI    G+ MP + M IGTI+HNIE+ PG+GG++ RAAGT  + +      +  +RL SG+ +L   +C AT+G VSNP++  +NL K G N   G  P       NP     +    G G+ +  G  GR  + P GKP  T G + R+
Sbjct:  107 PQRTAVGDKVVASQK-ADIKP--GNAMPFSGMPIGTIVHNIELKPGKGGQIARAAGTYAQFVGR-DGGYAQIRLSSGELRLVRQECMATVGAVSNPDNSNQNLGKAGRNRHKGIRPSVRGVVMNP-----VDHPHGGGEGRTSG--GRHPVTPWGKP--TKGARTRN 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_STRU0 (50S ribosomal protein L2 OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.946e-15
Identity = 42/92 (45.65%), Postives = 61/92 (66.30%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            +IG+ +PLA + +GT+IHNIE+ PG+GG+LVRAAG S + L +    + L+RL SG+ ++    C+ATIG+V N      N+ K G N W G
Sbjct:  125 KIGNALPLANIPVGTVIHNIEMKPGKGGELVRAAGASAQVLGQ-EGKYVLVRLQSGEVRMILGTCRATIGSVGNEQQSLVNIGKAGRNRWKG 215          

HSP 2 Score: 20.7866 bits (42), Expect = 1.946e-15
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKAP 240          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BARQU (50S ribosomal protein L2 OS=Bartonella quintana GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.359e-15
Identity = 46/115 (40.00%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPK 685
            P++  V D I+   A  +++ + G+ MPL  M +GTIIHN+E+ PG+GG++ R+AGT  + L        +LRL SG+++L    C AT+G VSNP+H   N  K G + W G +
Sbjct:  107 PQRLDVGDSII---AGSNVDVKPGNAMPLGNMPVGTIIHNVEMKPGKGGQIARSAGTYAQ-LVGRGQGMVILRLNSGEQRLVSGSCFATVGAVSNPDHANINDGKAGRSRWRGKR 217          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACV8 (50S ribosomal protein L2 OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.359e-15
Identity = 39/92 (42.39%), Postives = 60/92 (65.22%), Query Frame = 2
Query:  404 QIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG 679
            +IG+ +PL  + +GT+IHNIE+ PGQG  LVR+AG   + L      +C+++LPSG+ +   + C+ATIG+V N +HG ++  K G   W G
Sbjct:  125 EIGNALPLENIPVGTVIHNIELRPGQGAALVRSAGNFAQ-LTSREGKYCVIKLPSGEVRQILSACKATIGSVGNSDHGLESSGKAGRTRWMG 215          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_AGRT5 (50S ribosomal protein L2 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.359e-15
Identity = 60/167 (35.93%), Postives = 89/167 (53.29%), Query Frame = 2
Query:  341 PKKETVRDKIMRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLRS 835
            P++    DK++     VD+    G+ MPL  + +G+IIHN+E+ PG+GG++ R+AGT  + L    +   +LRL SG+++L    C A+IG VSN +HG  N  K G + W G  P       NP     +    G G+ +  G  GR  + P GKP  T G + RS
Sbjct:  107 PQRLAAGDKVIASDKAVDVKP--GNTMPLQYIPVGSIIHNVEMKPGKGGQIARSAGTYVQ-LVGRDAGMAILRLNSGEQRLVHGSCLASIGAVSNSDHGNINDGKAGRSRWRGKRPHVRGVVMNP-----VDHPHGGGEGRTSG--GRHPVTPWGKP--TKGKRTRS 261          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RK2_CHLAT (50S ribosomal protein L2, chloroplastic OS=Chlorokybus atmophyticus GN=rpl2 PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.359e-15
Identity = 59/149 (39.60%), Postives = 76/149 (51.01%), Query Frame = 2
Query:  380 MAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFG--PKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWG 820
            +A  D   Q+G+ +PL+ + +GT IHNIEV+PGQGGKLVRAAG     L     S+  +RLPSG+ +L   +C ATIG V N +     + K G   W G  PK      NP        G G G+  I    GR       KP+  WG
Sbjct:  117 IAGPDAPLQLGNALPLSKIPLGTGIHNIEVSPGQGGKLVRAAG-GVAQLVAKEGSYVTVRLPSGEVRLVLKECSATIGQVGNVDASNVTIGKAGRKRWLGQRPKVRGVVMNPVDH---PHGGGEGRAPI----GR------SKPVTPWG 251          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_ENTFA (50S ribosomal protein L2 OS=Enterococcus faecalis GN=rplB PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.528e-15
Identity = 40/101 (39.60%), Postives = 67/101 (66.34%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPW 673
            MR ++  + + ++G+ +PL  + +GT+IHNIE+ PG+GG+L+R+AGTS + L +    + L+RL SG+ ++    C+ATIG+V N  H   N+ K G + W
Sbjct:  114 MRLVSGPEADIKVGNALPLENIPVGTVIHNIEMKPGKGGQLIRSAGTSAQVLGK-EGKYVLIRLNSGEVRMILATCRATIGSVGNEQHELINIGKAGRSRW 213          

HSP 2 Score: 20.7866 bits (42), Expect = 2.528e-15
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 1
Query:  721 NHPQGEGEGTKP 756
            +HP G GEG  P
Sbjct:  229 DHPHGGGEGKTP 240          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACCR (50S ribosomal protein L2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.082e-15
Identity = 55/154 (35.71%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+A+IG V N  H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEVMSGPEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRASIGQVGNEQHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
BLAST of DY259772 vs. ExPASy Swiss-Prot
Match: RL2_BACCQ (50S ribosomal protein L2 OS=Bacillus cereus (strain Q1) GN=rplB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 3.082e-15
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 2
Query:  371 MRQMAHVDINSQIGSCMPLACMRIGTIIHNIEVNPGQGGKLVRAAGTSTKNLKEPTSSFCLLRLPSGKEKLNDTKCQATIGTVSNPNHGAKNLKKGGPNPWFGPKTVDKRNNPKSS*TILRGKGRGQNQIRGYTGRGFI*P*GKPLQTWGIKLR 832
            M  M+  + + +IG+ +PL  + +GT++HNIE+ PG+GG+LVR+AGTS + L +    + L+RL SG+ +L  + C+A +G V N +H    + K G + W G K    R +  +      G G G++ I   +      P GKP  T G K R
Sbjct:  114 MEIMSGAEADIKIGNALPLINIPVGTVVHNIELKPGRGGQLVRSAGTSAQVLGK-EGKYVLVRLTSGEVRLVLSACRAAVGQVGNESHELIKIGKAGRSRWLG-KRPTVRGSVMNPVDHPHGGGEGRSPIGRKSPMS---PWGKP--TLGFKTR 260          
The following BLAST results are available for this feature:
BLAST of DY259772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LACS11.807e-1535.1750S ribosomal protein L2 OS=Lactobacillus salivari... [more]
RL2_DINSH1.807e-1536.5350S ribosomal protein L2 OS=Dinoroseobacter shibae... [more]
RL2_STRU01.946e-1545.6550S ribosomal protein L2 OS=Streptococcus uberis (... [more]
RL2_BARQU2.359e-1540.0050S ribosomal protein L2 OS=Bartonella quintana GN... [more]
RL2_BACV82.359e-1542.3950S ribosomal protein L2 OS=Bacteroides vulgatus (... [more]
RL2_AGRT52.359e-1535.9350S ribosomal protein L2 OS=Agrobacterium tumefaci... [more]
RK2_CHLAT2.359e-1539.6050S ribosomal protein L2, chloroplastic OS=Chlorok... [more]
RL2_ENTFA2.528e-1539.6050S ribosomal protein L2 OS=Enterococcus faecalis ... [more]
RL2_BACCR3.082e-1535.7150S ribosomal protein L2 OS=Bacillus cereus (strai... [more]
RL2_BACCQ3.082e-1535.0650S ribosomal protein L2 OS=Bacillus cereus (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259772 ID=DY259772; Name=DY259772; organism=Citrus clementina; type=EST; length=1125bp
CTCACTCAGAAAAACTTTCACGGTGGCTGTCACCTTTCTGCTCAGTGTAT
TCACCCATCTTTCAATTCCACAGCATTCTTTTCTCAGCCGTAGGGTGCTT
TAGCTTCTGTCACCGCCGGTAACATGTTGTGATAGACAGTGAAATCAGCA
GAAGAAAACAAAACGGAGGAGAAAGAGACACAGAAAGAGATCAGCAGAAA
TGGCTTTGTGCAGAGTACGCTCAGCTTCATCGACGCTCTTCAACAGGCTT
CTCTGTCCTTTCGTTCTCAACAACAACACTACTTATCGCTATCAGTCCTC
TGAAACCGAATTAGTTGGTGATCCTTCAAAACAAGAAAAACCAAAAAAAG
AAACTGTGCGTGATAAGATAATGAGACAGATGGCTCATGTTGATATAAAT
TCTCAAATTGGAAGTTGCATGCCACTTGCTTGTATGCGTATTGGGACCAT
CATTCACAACATTGAGGTAAACCCAGGACAAGGTGGCAAGCTAGTTAGAG
CTGCGGGGACGTCAACCAAGAATTTGAAAGAACCCACTTCAAGCTTCTGT
TTATTAAGACTACCTTCTGGTAAAGAAAAACTGAATGACACTAAATGTCA
AGCCACCATTGGTACAGTGTCTAACCCCAACCATGGAGCTAAAAACCTTA
AGAAAGGCGGTCCAAACCCTTGGTTTGGTCCAAAAACCGTGGATAAAAGA
AATAACCCAAAATCCAGTTGAACCATCCTCAGGGGGAAGGGGAGGGGACA
AAACCAAATTAGGGGTTACACGGGACGGGGTTTCATTTAACCCTGAGGGA
AACCTTTGCAAACTTGGGGAATAAAACTCCGTTCCCCAAAAAAAAAAAAA
AAAAATACCCCTCCTAAAAATCACTTCACCTTTTCCAGCCCAGATCACCT
ATTCTCACAAACATACACCACATATTACCTTCTTTCCAAACCAGACGATT
CTACCCACATTTCAAGAATACCAATAAATTTATACTTCCATCTATCTTCC
CCTCCACTCTGCCACTCATTCTTACAATCAATACATAAATAAAACAACAA
CCCCCCCCGCATCTCCCACGAACTATCTCGTTAATCCTCAAAAACAACAG
TCGTACAATCAACACTACAAACAGA
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