DY259773

Overview
NameDY259773
Unique NameDY259773
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1033
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPG_PONAB (T-complex protein 1 subunit gamma OS=Pongo abelii GN=CCT3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.222e-24
Identity = 66/195 (33.85%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRF---GR----FKKYRKLKKL-GRTI*DTKLLKDWFSKKKAIQP 936
            T LGPK M KM+    G +++TNDG  IL +++V  PAAK +VE+S++QD   GDGTT+V+++AG +L      L   +HPTV+     KA    +  L  +++PV+++D D ++   ++S+ +K +S++S+L     C     +   K  +F   GR     KKY +++K+ G  I D+ +L+     K    P
Sbjct:   39 TCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMVEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDINDSDMMLNIINSSITTKAISRWSSL----AC--NIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 227          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPH_BOVIN (T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 5.514e-24
Identity = 61/133 (45.86%), Postives = 86/133 (64.66%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD----RDSLVKSASTSLNSKVVSQ 762
            T+LGP+GMDK+I    G+  I+NDGATIL  ++V+ PAAK LV+++KSQDA  GDGTT+V ++A   LKQ    +  G+HP +I      A   AV+ +  +AV V+  D    R  L K A T+L+SK++SQ
Sbjct:   38 TTLGPRGMDKLIVDGRGKATISNDGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTATQLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQ 170          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPH_PLAF7 (T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=PFC0350c PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 7.201e-24
Identity = 63/139 (45.32%), Postives = 89/139 (64.03%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPV----ELSDRDSLVKSASTSLNSKVVSQYSTLPG 780
            T+LGP+GMDK+I T   +V ITNDGAT++N + +  PAA +LV+++KSQD   GDGTT+VVV+AG LL +   LL+ GI P +I D    A   A++ L  +++      E   R  L+K A T+LNSK+VS +    G
Sbjct:   41 TTLGPRGMDKLIYTER-DVTITNDGATVMNLLNISHPAASILVDIAKSQDDEVGDGTTSVVVVAGELLNEAKGLLNDGIEPNMIIDGFRNACNVAINKLNELSLNFSNKNEEEKRSILLKCAQTALNSKLVSNHKEFFG 178          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 9.405e-24
Identity = 58/125 (46.40%), Postives = 83/125 (66.40%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSK 750
            ++LGPKGMDKM+ ++ G+V +TNDG TIL +M++  P A+M+VE++++Q+  AGDGTTT V IAG LLK    LL   IHPT I    + AA  A + +  +AV V+  D+D +   A TS+  K
Sbjct:   44 STLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLAAEQAREEVDNVAVDVDPDDKDLIRSVAETSMTGK 168          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPH_DICDI (T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.405e-24
Identity = 55/131 (41.98%), Postives = 88/131 (67.18%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSD-RDSLVKSASTSLNSKVVSQY 765
            T+LGP+GMDK+I  +  +V I+NDGAT++  ++++ PAA+ LV+++KSQD+  GDGTT+VV++AG  LK     L  GIHP +I      A   A   +  ++V ++  + R+ L K ASTS+NSK+++ +
Sbjct:   41 TTLGPRGMDKLIYQSERQVTISNDGATVMKLLDIVHPAARTLVDIAKSQDSEVGDGTTSVVILAGEFLKAAKPFLEEGIHPQIIIRAFRSACELAKQKIQELSVDIKPENMREFLEKCASTSMNSKLIASH 171          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPG_RAT (T-complex protein 1 subunit gamma OS=Rattus norvegicus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.228e-23
Identity = 66/195 (33.85%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRF---GR----FKKYRKLKKL-GRTI*DTKLLKDWFSKKKAIQP 936
            T LGPK M KM+    G +++TNDG  IL +++V  PAAK ++E+S++QD   GDGTT+V+++AG +L      L   +HPTV+      A    V  L  ++ PV++++RD ++   ++S+ +KV+S++S+L     C     +   K  +F   GR     KKY +++K+ G  I D+ +L+     K    P
Sbjct:   39 TCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMVSTLKKISTPVDVNNRDMMLNIINSSITTKVISRWSSL----AC--NIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 227          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPG_MACFA (T-complex protein 1 subunit gamma OS=Macaca fascicularis GN=CCT3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.228e-23
Identity = 65/195 (33.33%), Postives = 109/195 (55.90%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRF---GR----FKKYRKLKKL-GRTI*DTKLLKDWFSKKKAIQP 936
            T LGPK M KM+    G +++TNDG  IL +++V  PAAK ++E+S++QD   G GTT+V+++AG +L      L   +HPTV+     KA    +  L  +++PV+++D D ++   ++S+ +K +S++S+L     C     +   K  +F   GR     KKY K++K+ G  I D+ +L+     K    P
Sbjct:   39 TCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGGGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDINDSDMMLNIINSSITTKAISRWSSL----AC--NIALDAVKTVQFEENGRKEIDIKKYAKVEKIPGGIIEDSCVLRGVMINKDVTHP 227          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPG_YEAST (T-complex protein 1 subunit gamma OS=Saccharomyces cerevisiae GN=CCT3 PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 2.736e-23
Identity = 68/197 (34.52%), Postives = 110/197 (55.84%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCL-ILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYS------TLPGAVTC*KRF--IIPGPKPTRFGRFKKYRKLKKL-GRTI*DTKLLKDWFSKKKAIQP 936
            T LGPK M KM+    G +++TNDG  IL +++V  PAAK ++ELS++QD   GDGTTTV+++AG +L QC   L+   IHP +I   L KA   A++V+  ++ PV++ +  ++ K    S+ +K V  +S       L    T  K     + G +P      K+Y +++K+ G  + D+++LK     K  + P
Sbjct:   37 TCLGPKAMLKMLLDPMGGLVLTNDGHAILREIDVAHPAAKSMLELSRTQDEEVGDGTTTVIILAGEILAQCAPYLIEKNIHPVIIIQALKKALTDALEVIKQVSKPVDVENDAAMKKLIQASIGTKYVIHWSEKMCELALDAVKTVRKDLGQTVEG-EPNFEIDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHP 232          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPG_MOUSE (T-complex protein 1 subunit gamma OS=Mus musculus GN=Cct3 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 4.668e-23
Identity = 64/195 (32.82%), Postives = 110/195 (56.41%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTAMAVPVELSDRDSLVKSASTSLNSKVVSQYSTLPGAVTC*KRFIIPGPKPTRF---GR----FKKYRKLKKL-GRTI*DTKLLKDWFSKKKAIQP 936
            T LGPK M KM+    G +++TNDG  IL +++V  PAAK ++E+S++QD   GDGTT+V+++AG +L      L   +HPTV+      A    +  L  ++ PV++++R+ ++   ++S+ +KV+S++S+L     C     +   K  +F   GR     KKY +++K+ G  I D+ +L+     K    P
Sbjct:   39 TCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRMALDDMISTLKKISTPVDVNNREMMLSIINSSITTKVISRWSSL----AC--NIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 227          
BLAST of DY259773 vs. ExPASy Swiss-Prot
Match: TCPA_DROME (T-complex protein 1 subunit alpha OS=Drosophila melanogaster GN=T-cp1 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 6.096e-23
Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query:  376 TSLGPKGMDKMISTASGEVIITNDGATILNKMEVLQPAAKMLVELSKSQDAAAGDGTTTVVVIAGALLKQCLILLSSGIHPTVISDTLHKAAIHAVDVLTA-MAVPVELSDRDSLVKSASTSLNSKVV 756
            +SLGP G+DKM+    G+V +TNDGATIL  +EV  PAAK+LVEL++ QD   GDGTT+VV++A  LLK    L+   IHPT I      A   A   ++  +  PV+   RDSL+  A TS++SK++
Sbjct:   37 SSLGPVGLDKMLVDDIGDVTVTNDGATILRLLEVEHPAAKVLVELAQLQDEEVGDGTTSVVILAAELLKNADELVKQKIHPTSIISGYRIACKEACKYISEHLTAPVDELGRDSLINIAKTSMSSKII 164          
The following BLAST results are available for this feature:
BLAST of DY259773 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 403
Match NameE-valueIdentityDescription
TCPG_PONAB4.222e-2433.85T-complex protein 1 subunit gamma OS=Pongo abelii ... [more]
TCPH_BOVIN5.514e-2445.86T-complex protein 1 subunit eta OS=Bos taurus GN=C... [more]
TCPH_PLAF77.201e-2445.32T-complex protein 1 subunit eta OS=Plasmodium falc... [more]
THSB_HALSA9.405e-2446.40Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPH_DICDI9.405e-2441.98T-complex protein 1 subunit eta OS=Dictyostelium d... [more]
TCPG_RAT1.228e-2333.85T-complex protein 1 subunit gamma OS=Rattus norveg... [more]
TCPG_MACFA1.228e-2333.33T-complex protein 1 subunit gamma OS=Macaca fascic... [more]
TCPG_YEAST2.736e-2334.52T-complex protein 1 subunit gamma OS=Saccharomyces... [more]
TCPG_MOUSE4.668e-2332.82T-complex protein 1 subunit gamma OS=Mus musculus ... [more]
TCPA_DROME6.096e-2346.88T-complex protein 1 subunit alpha OS=Drosophila me... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259773 ID=DY259773; Name=DY259773; organism=Citrus clementina; type=EST; length=1033bp
ATCAAATTGCAAAATTCTCTCCCACATAAACCCACTTCACTTTACTGTCC
GCCTTGTTCCCTCCAGAACCTCCCCTGAATCTCTGTTTCTAGGGTTTTCG
TAAATTTCATTTCCACTCTCACCCCGATCTTTCCTCTTTGTTTACACTTT
CTGCCACTCCAAAACTCTGATCCGAACAAAATTAGGGTTCTAGGGATCCA
AAAAAATTAGGGTTTTAGGGTTTCTCGATCATACAAAATACAAATGGCAT
CACCAGCAGTAGTACCCTCTCAACCTCGTTCTTCGAAAACGGAGTCCTAC
GTGGACAACAAGCGAAAAGAAGACATCCGCCAAGCCAATATCGTGGCGGC
GCGAGCCGTCGCCGATGCCGTGCGTACCAGTCTTGGCCCCAAAGGCATGG
ACAAGATGATCTCCACAGCCAGCGGGGAGGTCATCATCACCAATGACGGC
GCTACCATCTTGAACAAAATGGAAGTCCTCCAGCCCGCCGCCAAGATGCT
TGTTGAACTCTCCAAGTCTCAGGACGCCGCCGCCGGAGATGGTACCACCA
CCGTCGTCGTCATCGCCGGCGCCTTGTTGAAACAGTGCCTCATCCTGTTG
TCCAGCGGAATCCATCCCACCGTTATCTCCGATACTCTACACAAGGCCGC
GATCCATGCCGTCGATGTGCTCACTGCAATGGCCGTGCCGGTCGAGTTAT
CCGACCGTGACAGCTTGGTTAAGTCCGCGAGCACCTCGTTAAACAGTAAG
GTCGTGAGTCAGTACTCGACCTTACCGGGCGCCGTTACCTGTTGAAAGCG
TTTTATCATTCCTGGACCCAAACCAACCAGATTTGGTCGATTTAAAAAAT
ATAGGAAATTGAAAAAATTAGGAAGGACCATTTGAGATACAAAGTTGTTA
AAGGATTGGTTTTCAAAAAAAAAGGCGATTCAGCCTCACGGGGGCCCAAC
CCGGGGGAAAAAGCCAAATTTGCCGGGATTCATTTTCAAATTTCCCCCCC
AAAAAGAAAAAAACACAAAAACTTTGGGGTTTC
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