DY259778

Overview
NameDY259778
Unique NameDY259778
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_OLEEU (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Olea europaea PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 7.764e-79
Identity = 144/200 (72.00%), Postives = 164/200 (82.00%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  RVFMAST+    + EVG +KKP+ PPREVHVQVTHS+  +K EIF SL  WA+ENILV LK V+KCWQP D+LP+  SEGF EQV ELR+RCKEIPDDYF+VLVGDMITEEALPTYQTMLNTL+GVRDETGASLT WAIWTRAWTAE+NRHGDLLNKYLYLSGRV++KQ EKTI         P+ +  PYLGF++T
Sbjct:   21 RSHRVFMASTIHSP-SMEVGKVKKPFTPPREVHVQVTHSLAPEKREIFNSLNNWAQENILVLLKDVDKCWQPSDFLPDSASEGFDEQVMELRKRCKEIPDDYFIVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMKQIEKTIQYLIGSGMDPRTENNPYLGFIYT 219          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_BRANA (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.464e-77
Identity = 137/194 (70.62%), Postives = 163/194 (84.02%), Query Frame = 2
Query:  242 MASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            +AS+ P   +KEV +LKKP+ PP+EVHVQV HSMP QK+EIFKS+E WAE+N+L  LK VEK WQP D+LP+P S+GF +QV+ELRER +E+PDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGAS TSWAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         P+ +  PYLGF++T
Sbjct:   34 LASSSPALSSKEVESLKKPFTPPKEVHVQVLHSMPPQKIEIFKSMEDWAEQNLLTQLKDVEKSWQPQDFLPDPASDGFEDQVRELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYT 227          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STADS_BRANA (Acyl-[acyl-carrier-protein] desaturase, seed specific, chloroplastic OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.619e-76
Identity = 138/195 (70.77%), Postives = 165/195 (84.62%), Query Frame = 2
Query:  242 MASTLPPAIT-KEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            +AS+  PA++ KEV +LKKP+ PPREVH+QV HSMP QK+EIFKS+E  AE+N+L HLK VEK WQP D+LP+P S+GF +QVKELRER +E+PDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGAS TSWA+WTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         P+ +  PYLGF++T
Sbjct:   34 LASSSSPALSSKEVESLKKPFTPPREVHLQVLHSMPPQKIEIFKSMEDRAEQNLLPHLKDVEKSWQPQDFLPDPASDGFEDQVKELRERARELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASPTSWAVWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPRTENNPYLGFIYT 228          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_HELAN (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Helianthus annuus PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 1.790e-75
Identity = 138/200 (69.00%), Postives = 163/200 (81.50%), Query Frame = 2
Query:  224 RCSRVFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            R  +  MAST+  A TK V + KKP+ PPREVH QV HSMP QK+EIFKS+EGWAE NILVHLKPVEKCWQ  D+LP+P S+GF EQV+ELR R KEIPDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGA+L    +WTRAWTAE+NRHGDLL++YLYLSGRV+++Q +KTI         P+ + +PYLGF++T
Sbjct:   27 RSPKFAMASTIGSATTK-VESTKKPFTPPREVHQQVLHSMPPQKIEIFKSMEGWAENNILVHLKPVEKCWQAQDFLPDPASDGFMEQVEELRARAKEIPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGATLLLGLVWTRAWTAEENRHGDLLHQYLYLSGRVDMRQIQKTIQYLIGSGMDPRTENSPYLGFIYT 225          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_ORYSJ (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Oryza sativa subsp. japonica GN=Os04g0379900 PE=2 SV=1)

HSP 1 Score: 278.485 bits (711), Expect = 4.409e-74
Identity = 135/196 (68.88%), Postives = 157/196 (80.10%), Query Frame = 2
Query:  236 VFMASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            V MAST+       V   KKPY PPREVH+QV HS+P QK EIF SL+ WA+EN+L  LKPVEK WQP D+LP+P S+GFY++VKELRER KEIPDDYFV LVGDM+TEEALPTYQTMLNTL+GVRDETGAS T+WA+WTRAWTAE+NRHGDLLNKY+YL+GRV++KQ EKTI         P  +  PYLGFL+T
Sbjct:   29 VAMASTI-----NRVKTAKKPYTPPREVHLQVKHSLPPQKREIFDSLQPWAKENLLNLLKPVEKSWQPQDFLPDPSSDGFYDEVKELRERAKEIPDDYFVCLVGDMVTEEALPTYQTMLNTLDGVRDETGASPTTWAVWTRAWTAEENRHGDLLNKYMYLTGRVDMKQIEKTIQYLIGSGMDPGTENNPYLGFLYT 219          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_LINUS (Acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Linum usitatissimum PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.286e-65
Identity = 134/225 (59.56%), Postives = 152/225 (67.56%), Query Frame = 2
Query:  158 MALKLNXXXXXXXXXXXXIRKHRCSRVFM--ASTLPPAITKEVGNLKKPYCPPREVHVQVTHSMPQQKMEIFKSLEGWAEENILV-HLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHT 823
            MALKLN                R  R F+  AST     TKE    +  +   R  +       P    EIFKSL      ++L+ HLKPVEKCWQP D+LPEPES+GF EQVKELR R KE+PDDYFVVLVGDMITEEALPTYQTMLNTL+GVRDETGASLT WAIWTRAWTAE+NRHGDLLNKYLYLSGRV+++Q EKTI         PK +  PYLGF++T
Sbjct:    1 MALKLNPVTTFPSTRSLNNFSSRSPRTFLMAASTFSSTSTKEAEAKEVTWTTKRGAYASDPFHAPTGSWEIFKSLGRLGLRDVLISHLKPVEKCWQPQDFLPEPESDGFEEQVKELRARAKELPDDYFVVLVGDMITEEALPTYQTMLNTLDGVRDETGASLTPWAIWTRAWTAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYT 225          
BLAST of DY259778 vs. ExPASy Swiss-Prot
Match: STAD_CORSA (Omega-12 acyl-[acyl-carrier-protein] desaturase, chloroplastic OS=Coriandrum sativum PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 1.683e-57
Identity = 114/199 (57.29%), Postives = 140/199 (70.35%), Query Frame = 2
Query:  359 EIFKSLEGWAEENILVHLKPVEKCWQPMDYLPEPESEGFYEQVKELRERCKEIPDDYFVVLVGDMITEEALPTYQTMLNTLNGVRDETGASLTSWAIWTRAWTAEKNRHGDLLNKYLYLSGRVNLKQNEKTIHT**DQEWIPKKKTTPYLGFLHTFIPRKGNL*LPMETTPKNAQGKLRNLG--NLATKIGDPLPPEKK 949
            E+F SLEGWA +NILVHLK VE  WQP DYLP+P S+ F +QVKE+RER K+IPD+YFVVLVGDMITEEALPTY +MLN  +G++D+TGA  TSWA WTRAWTAE+NRHGDLLNKYLYLSGRV+++  EKTI          K +  PY+GF++T    +    +    T K AQ    + G  NLA   G+    EK+
Sbjct:   59 ELFNSLEGWARDNILVHLKSVENSWQPQDYLPDPTSDAFEDQVKEMRERAKDIPDEYFVVLVGDMITEEALPTYMSMLNRCDGIKDDTGAQPTSWATWTRAWTAEENRHGDLLNKYLYLSGRVDMRMIEKTIQYLIGSGMDTKTENCPYMGFIYTSFQERATF-ISHANTAKLAQ----HYGDKNLAQVCGNIASDEKR 252          
The following BLAST results are available for this feature:
BLAST of DY259778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
STAD_OLEEU7.764e-7972.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_BRANA1.464e-7770.62Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STADS_BRANA1.619e-7670.77Acyl-[acyl-carrier-protein] desaturase, seed speci... [more]
STAD_HELAN1.790e-7569.00Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_ORYSJ4.409e-7468.88Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_LINUS1.286e-6559.56Acyl-[acyl-carrier-protein] desaturase, chloroplas... [more]
STAD_CORSA1.683e-5757.29Omega-12 acyl-[acyl-carrier-protein] desaturase, c... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YC18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259778 ID=DY259778; Name=DY259778; organism=Citrus clementina; type=EST; length=1028bp
CTTCTCTTCGTGTTTTGTTTCATTTCTCCCTGTTTTGTCTTGGCCATTTC
TTTGACACATACGTACGTAAATTAAACTTTATTTTTTTTTTTTTTCAAAA
TATCATCGTCATCTTCTTCGATAAAAACGATATCTTTTGAAATAAACATT
TACAGCAATGGCTTTGAAACTGAATCCAACAACATTCAGCTTCCCGTCGT
CATCATCATCAATCCGCAAACACAGATGTTCAAGAGTCTTCATGGCATCC
ACTCTTCCTCCTGCTATCACCAAAGAGGTTGGGAATCTTAAGAAGCCGTA
TTGCCCTCCAAGGGAGGTACACGTTCAAGTAACTCATTCTATGCCACAAC
AAAAGATGGAGATATTCAAATCTTTGGAGGGTTGGGCTGAGGAGAATATC
TTGGTGCACCTAAAGCCTGTTGAGAAATGCTGGCAACCCATGGATTATCT
GCCGGAACCTGAATCGGAAGGATTTTATGAGCAAGTCAAGGAGTTGAGAG
AAAGATGCAAGGAAATCCCTGATGACTATTTTGTTGTATTGGTTGGAGAT
ATGATCACAGAAGAAGCCCTTCCTACTTACCAGACAATGCTGAACACCCT
AAACGGGGTTCGAGATGAGACTGGTGCAAGCCTCACTTCTTGGGCAATTT
GGACTAGGGCTTGGACTGCTGAAAAAAACAGGCATGGCGACCTTCTCAAT
AAGTATCTCTACCTATCTGGACGTGTAAACCTGAAACAAAATGAAAAAAC
AATTCATACCTGATAGGATCAAGAATGGATCCCAAAAAAAAAAACAACCC
CCTACCTTGGTTTCCTCCACACCTTCATTCCAAGAAAGGGCAACCTTTAA
CTTCCCATGGAAACCACCCCCAAAAATGCCCAAGGAAAATTACGAAACCT
TGGAAACCTTGCAACAAAAATTGGGGACCCCTTGCCCCCTGAAAAAAAAA
CCCCCATGAAAACCGGCCAACCCACAAAATTTGGGAAAAAACCCCTTTTA
AAATTTGTACCCCAAAGGGGCCTCGGCT
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