DY259786

Overview
NameDY259786
Unique NameDY259786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length950
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1309 contig Ccv1_Contig1309:1..950. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP3S_ASHGO (AP-3 complex subunit sigma OS=Ashbya gossypii GN=APS3 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.712e-27
Identity = 59/156 (37.82%), Postives = 103/156 (66.03%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSN--FVEADSIFGPGT-------RLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCS 548
            MI +V++ N + +PRL K+Y    + KQ+ L+  V+ ++  R  ++ +   +   S+   G+       +++YK++ATLYF F+ D  E+ELA+LDLIQ FVE LD+CF  V ELD+++N+  L ++L+EII GG V+ET+  ++++ V+E+++ S
Sbjct:    1 MIHAVLIFNKKCQPRLVKYYTPVDLPKQKLLLEQVYELISQRNSSIQSSFLITPPSLLSSGSETINEDIQIIYKNYATLYFTFIVDDQESELAILDLIQTFVEALDRCFAEVNELDLIFNWQTLESVLEEIIQGGMVIETNVKKIVETVDELNRTS 156          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S3_MOUSE (AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap1s3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 4.410e-25
Identity = 55/154 (35.71%), Postives = 94/154 (61.04%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPSLSLYL 569
            MI  +++ + QGK RL K+Y   P ++++++ R +   +  R    S+F++   +     +LVYK +A+LYF    ++ +NEL  L+++  +VE LDK F NVCELDI++N+ K + ILDE I GG++ ETS    +KA+E+      ++  Y+
Sbjct:    1 MIHFILLFSRQGKLRLQKWYTTLPDKERKKITRDIIQTVLSRGHRTSSFIDWKEL-----KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKTAVKAIEDSDMLQETMEEYM 149          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S3_HUMAN (AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP1S3 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.283e-24
Identity = 55/142 (38.73%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            MI  +++ + QGK RL K+Y   P ++++++ R +  ++  R    S+FV+   +     +LVYK +A+LYF    ++ +NEL  L+++  +VE LDK F NVCELDI++N+ K + ILDE I GG++ ETS    +KA+E+
Sbjct:    1 MIHFILLFSRQGKLRLQKWYITLPDKERKKITREIVQIILSRGHRTSSFVDWKEL-----KLVYKRYASLYFCCAIENQDNELLTLEIVHRYVELLDKYFGNVCELDIIFNFEKAYFILDEFIIGGEIQETSKKIAVKAIED 137          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_ASPFU (AP-2 complex subunit sigma OS=Aspergillus fumigatus GN=aps2 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNV-SNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            ++  ++V N QGK RLAK+Y     E++ +L   V  ++  R     SNFVE    F   T++VY+ +A L+F    D+++NELA L+ I  FVE LD+ F NVCELD+V+N+ K++ ILDE+   G++ ETS   V+  +E + K
Sbjct:    2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVE----FKRSTKIVYRRYAGLFFCVCVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDK 143          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_SCHPO (AP-1 complex subunit sigma-1 OS=Schizosaccharomyces pombe GN=SPAP27G11.06c PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.201e-22
Identity = 51/139 (36.69%), Postives = 92/139 (66.19%), Query Frame = 3
Query:  111 IKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAV 527
            IK  ++++ QGK RLAK+++   ++++ ++IR V  ++  R   + NFVE       G ++VY+ +A+L+FV   +  +NEL +L++I  FVE LDK F NVCELD+++N+ K + +++E++  G++ E+S   V+ AV
Sbjct:    3 IKFFLLVSRQGKVRLAKWFNTLSIKERAKIIRDVSSLVITRKPKMCNFVEYK-----GEKIVYRRYASLFFVCGIEQDDNELIILEVIHKFVECLDKYFGNVCELDLIFNFEKAYYVMEELLLAGELQESSKTNVLSAV 136          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_EMENI (AP-2 complex subunit sigma OS=Emericella nidulans GN=aps2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.568e-22
Identity = 59/146 (40.41%), Postives = 90/146 (61.64%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNV-SNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            ++  ++V N QGK RLAK+Y     E++ +L   V  ++  R     SNFVE    F   T++VY+ +A L+F    D+++NELA L+ I  FVE LD+ F NVCELD+V+N+ K++ ILDE+   G++ ETS   V+  +E + K
Sbjct:    2 VLSFILVQNRQGKTRLAKWYAPYSDEEKVKLKGEVHRLVAPRDQKYQSNFVE----FKRSTKIVYRRYAGLFFCACVDATDNELAYLEAIHFFVEVLDQFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDK 143          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_SCHPO (AP-2 complex subunit sigma OS=Schizosaccharomyces pombe GN=aps2 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 55/146 (37.67%), Postives = 94/146 (64.38%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNV-SNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            MI+ +++ N  GK RL+K+Y     +++  L   +  ++  R     +NF+E ++     ++LVY+ +A LYF F  DS++N+LA+L++I  FVE LD  F NVCELD+++N+ K+  ILDEII GG++ E++   V++ +E + K
Sbjct:    1 MIQFILIQNRHGKNRLSKYYVPFDDDEKVRLKARIHQLISQRNQKFQANFLEWEN-----SKLVYRRYAGLYFCFCVDSTDNDLAILEMIHFFVEILDSFFGNVCELDLIFNFYKVSAILDEIILGGEIGESNKKSVLERIEALEK 141          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_RAT (AP-2 complex subunit sigma OS=Rattus norvegicus GN=Ap2s1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIK 521
            MI+ +++ N  GK RLAK+Y     +++Q+LI  V  V+  R    +NFVE  +      +++Y+ +A LYF    D ++N LA L+ I  FVE L++ F NVCELD+V+N+ K++T++DE+   G++ ETS  +V+K
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_PONAB (AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIK 521
            MI+ +++ N  GK RLAK+Y     +++Q+LI  V  V+  R    +NFVE  +      +++Y+ +A LYF    D ++N LA L+ I  FVE L++ F NVCELD+V+N+ K++T++DE+   G++ ETS  +V+K
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_MOUSE (AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIK 521
            MI+ +++ N  GK RLAK+Y     +++Q+LI  V  V+  R    +NFVE  +      +++Y+ +A LYF    D ++N LA L+ I  FVE L++ F NVCELD+V+N+ K++T++DE+   G++ ETS  +V+K
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133          
The following BLAST results are available for this feature:
BLAST of DY259786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP3S_ASHGO4.712e-2737.82AP-3 complex subunit sigma OS=Ashbya gossypii GN=A... [more]
AP1S3_MOUSE4.410e-2535.71AP-1 complex subunit sigma-3 OS=Mus musculus GN=Ap... [more]
AP1S3_HUMAN1.283e-2438.73AP-1 complex subunit sigma-3 OS=Homo sapiens GN=AP... [more]
AP2S_ASPFU1.201e-2240.41AP-2 complex subunit sigma OS=Aspergillus fumigatu... [more]
AP1S1_SCHPO1.201e-2236.69AP-1 complex subunit sigma-1 OS=Schizosaccharomyce... [more]
AP2S_EMENI1.568e-2240.41AP-2 complex subunit sigma OS=Emericella nidulans ... [more]
AP2S_SCHPO2.048e-2237.67AP-2 complex subunit sigma OS=Schizosaccharomyces ... [more]
AP2S1_RAT2.048e-2239.13AP-2 complex subunit sigma OS=Rattus norvegicus GN... [more]
AP2S1_PONAB2.048e-2239.13AP-2 complex subunit sigma OS=Pongo abelii GN=AP2S... [more]
AP2S1_MOUSE2.048e-2239.13AP-2 complex subunit sigma OS=Mus musculus GN=Ap2s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259786 ID=DY259786; Name=DY259786; organism=Citrus clementina; type=EST; length=950bp
AATTGTATATTTAAAAAAAAAAAGAAAGGAAGCCATTGATCACTGTCTGA
TCAGTCGATCTGTAGTTTACTTGCTTGGAGCGGGAATAGAAAGCCAAAGG
AATAAAAATGATAAAATCGGTGATGGTTATGAACACGCAGGGCAAGCCTC
GCCTCGCGAAATTTTACGATTTTCAGCCCGTGGAGAAGCAGCAAGAGCTA
ATACGCAGCGTTTTCGGAGTCTTATGCGGTAGAGCTGATAATGTCAGCAA
TTTTGTTGAGGCTGATTCAATTTTCGGCCCGGGTACACGCCTTGTATATA
AGCACTTTGCAACTCTGTACTTCGTCTTCGTATTTGACAGTTCTGAAAAT
GAGCTAGCTATGCTTGATCTTATACAAGTTTTCGTGGAGACTTTAGACAA
ATGCTTCAAAAATGTATGTGAGCTCGACATTGTGTACAACTACAGCAAGT
TGCACACTATTCTTGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACA
AGTTCTATAGAAGTGATCAAGGCTGTTGAAGAAATATCAAAGTGCTCTCC
CTCTCTCTCCCTCTACCTGTTTGTCTTTCTTCGGGCCTAGTACTCGCCCA
CTTTTGTTATGTTATAACTAATAGATGATTCTGCCTGTTGCAGGCTGGAA
TCCGCCCCAAACGCTATCGCACTTGTCTCCAAGTCTGTTTCTGGTTGGCG
AAATCCGTAGCCTGTAGTAATGCACCTGTTAAAAAAATCCATGTCCCAAT
TTGAATTTGAAATGCAATTACCTTCCCTTTCCAAACTTATTTGTGTTGGA
AAGGGTGGTAGCCGGGATTTCAATTGGCCCGCCATATGAACCCGGGTTCC
AAATTTGGGAAAAATTTTTCCTCCTTGACCCCCTAAAATTGGATTCCAAC
CCATAAAAAAAAACCCCTGGGGGCCACCTACCAAAACCCGGAGGGCGGAG
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