DY259786

Overview
NameDY259786
Unique NameDY259786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length950
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_HUMAN (AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S1 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIK 521
            MI+ +++ N  GK RLAK+Y     +++Q+LI  V  V+  R    +NFVE  +      +++Y+ +A LYF    D ++N LA L+ I  FVE L++ F NVCELD+V+N+ K++T++DE+   G++ ETS  +V+K
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_BOVIN (AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 54/138 (39.13%), Postives = 88/138 (63.77%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIK 521
            MI+ +++ N  GK RLAK+Y     +++Q+LI  V  V+  R    +NFVE  +      +++Y+ +A LYF    D ++N LA L+ I  FVE L++ F NVCELD+V+N+ K++T++DE+   G++ ETS  +V+K
Sbjct:    1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTVRDAKHTNFVEFRNF-----KIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLK 133          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_MOUSE (AP-1 complex subunit sigma-1A OS=Mus musculus GN=Ap1s1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 53/142 (37.32%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            M++ +++ + QGK RL K+Y     +++++++R +  V+  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L+LI  +VE LDK F +VCELDI++N+ K + ILDE + GG V +TS   V+KA+E+
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDL-----KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQ 137          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_HUMAN (AP-1 complex subunit sigma-1A OS=Homo sapiens GN=AP1S1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.048e-22
Identity = 53/142 (37.32%), Postives = 91/142 (64.08%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            M++ +++ + QGK RL K+Y     +++++++R +  V+  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L+LI  +VE LDK F +VCELDI++N+ K + ILDE + GG V +TS   V+KA+E+
Sbjct:    1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDL-----KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQ 137          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_BOVIN (AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1S1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.784e-22
Identity = 52/141 (36.88%), Postives = 90/141 (63.83%), Query Frame = 3
Query:  111 IKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            ++ +++ + QGK RL K+Y     +++++++R +  V+  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L+LI  +VE LDK F +VCELDI++N+ K + ILDE + GG V +TS   V+KA+E+
Sbjct:    1 MRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLARKPKMCSFLEWRDL-----KVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQ 136          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_DICDI (AP-1 complex subunit sigma-1 OS=Dictyostelium discoideum GN=ap1s1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.265e-21
Identity = 57/151 (37.75%), Postives = 87/151 (57.62%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYD-FQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPSL 557
            MI  ++  N Q K RL+KFY  + P EK +   R V   +  R+    NFV+          +VY+ FA+L+FV V DS++NEL  L+ IQ FV  LD  F N+CELD++Y + + + +LDE +  G + E+SS E+++A+ +      SL
Sbjct:    1 MIHFLLCFNRQSKVRLSKFYSTYTPTEKNRAT-REVMNQVLSRSPKFCNFVQWREF-----TIVYQRFASLFFVMVTDSTDNELVTLESIQRFVVVLDIVFGNICELDLIYEFQRAYQVLDEFLLTGHLQESSSKEILRAINDAEGMEKSL 145          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_GIBZE (AP-2 complex subunit sigma OS=Gibberella zeae GN=APS2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.863e-21
Identity = 57/146 (39.04%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNV-SNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            M+  +++ N QGK RLAK+Y     E++ +L   V  ++  R     SNFVE  +      ++VY+ +A L+F    D+++NELA L+ I  FVE LD  F NVCELD+V+N+ K++ ILDE+   G++ ETS   V+  +E + K
Sbjct:    1 MLSFILIQNRQGKTRLAKWYAPFSDEQKIKLKGEVHRLVAPRDQKYQSNFVEFRN-----NKIVYRRYAGLFFCACVDTNDNELAFLEAIHFFVEVLDAFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDK 141          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S2_MOUSE (AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap1s2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.590e-21
Identity = 51/138 (36.96%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  120 VMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            +++ + QGK RL K+Y     ++++++ R +   +  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L++I  +VE LDK F +VCELDI++N+ K + ILDE + GG+V ETS   V+KA+E+
Sbjct:    4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDL-----KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQ 136          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S2_HUMAN (AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP1S2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.590e-21
Identity = 51/138 (36.96%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  120 VMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            +++ + QGK RL K+Y     ++++++ R +   +  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L++I  +VE LDK F +VCELDI++N+ K + ILDE + GG+V ETS   V+KA+E+
Sbjct:    4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDL-----KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQ 136          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S2_BOVIN (AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.590e-21
Identity = 51/138 (36.96%), Postives = 87/138 (63.04%), Query Frame = 3
Query:  120 VMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            +++ + QGK RL K+Y     ++++++ R +   +  R   + +F+E   +     ++VYK +A+LYF    +  +NEL  L++I  +VE LDK F +VCELDI++N+ K + ILDE + GG+V ETS   V+KA+E+
Sbjct:    4 MLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDL-----KIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQ 136          
The following BLAST results are available for this feature:
BLAST of DY259786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S1_HUMAN2.048e-2239.13AP-2 complex subunit sigma OS=Homo sapiens GN=AP2S... [more]
AP2S1_BOVIN2.048e-2239.13AP-2 complex subunit sigma OS=Bos taurus GN=AP2S1 ... [more]
AP1S1_MOUSE2.048e-2237.32AP-1 complex subunit sigma-1A OS=Mus musculus GN=A... [more]
AP1S1_HUMAN2.048e-2237.32AP-1 complex subunit sigma-1A OS=Homo sapiens GN=A... [more]
AP1S1_BOVIN7.784e-2236.88AP-1 complex subunit sigma-1A OS=Bos taurus GN=AP1... [more]
AP1S1_DICDI2.265e-2137.75AP-1 complex subunit sigma-1 OS=Dictyostelium disc... [more]
AP2S_GIBZE3.863e-2139.04AP-2 complex subunit sigma OS=Gibberella zeae GN=A... [more]
AP1S2_MOUSE6.590e-2136.96AP-1 complex subunit sigma-2 OS=Mus musculus GN=Ap... [more]
AP1S2_HUMAN6.590e-2136.96AP-1 complex subunit sigma-2 OS=Homo sapiens GN=AP... [more]
AP1S2_BOVIN6.590e-2136.96AP-1 complex subunit sigma-2 OS=Bos taurus GN=AP1S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259786 ID=DY259786; Name=DY259786; organism=Citrus clementina; type=EST; length=950bp
AATTGTATATTTAAAAAAAAAAAGAAAGGAAGCCATTGATCACTGTCTGA
TCAGTCGATCTGTAGTTTACTTGCTTGGAGCGGGAATAGAAAGCCAAAGG
AATAAAAATGATAAAATCGGTGATGGTTATGAACACGCAGGGCAAGCCTC
GCCTCGCGAAATTTTACGATTTTCAGCCCGTGGAGAAGCAGCAAGAGCTA
ATACGCAGCGTTTTCGGAGTCTTATGCGGTAGAGCTGATAATGTCAGCAA
TTTTGTTGAGGCTGATTCAATTTTCGGCCCGGGTACACGCCTTGTATATA
AGCACTTTGCAACTCTGTACTTCGTCTTCGTATTTGACAGTTCTGAAAAT
GAGCTAGCTATGCTTGATCTTATACAAGTTTTCGTGGAGACTTTAGACAA
ATGCTTCAAAAATGTATGTGAGCTCGACATTGTGTACAACTACAGCAAGT
TGCACACTATTCTTGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACA
AGTTCTATAGAAGTGATCAAGGCTGTTGAAGAAATATCAAAGTGCTCTCC
CTCTCTCTCCCTCTACCTGTTTGTCTTTCTTCGGGCCTAGTACTCGCCCA
CTTTTGTTATGTTATAACTAATAGATGATTCTGCCTGTTGCAGGCTGGAA
TCCGCCCCAAACGCTATCGCACTTGTCTCCAAGTCTGTTTCTGGTTGGCG
AAATCCGTAGCCTGTAGTAATGCACCTGTTAAAAAAATCCATGTCCCAAT
TTGAATTTGAAATGCAATTACCTTCCCTTTCCAAACTTATTTGTGTTGGA
AAGGGTGGTAGCCGGGATTTCAATTGGCCCGCCATATGAACCCGGGTTCC
AAATTTGGGAAAAATTTTTCCTCCTTGACCCCCTAAAATTGGATTCCAAC
CCATAAAAAAAAACCCCTGGGGGCCACCTACCAAAACCCGGAGGGCGGAG
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