DY259786

Overview
NameDY259786
Unique NameDY259786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length950
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_NEUCR (AP-2 complex subunit sigma OS=Neurospora crassa GN=aps-2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 8.607e-21
Identity = 56/146 (38.36%), Postives = 88/146 (60.27%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNV-SNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            M+  +++ N QGK RLAK+Y     E++ +L   +  ++  R     SNFVE  +      ++VY+ +A L+F    D+++NELA L+ I  FVE LD  F NVCELD+V+N+ K++ ILDE+   G++ ETS   V+  +E + K
Sbjct:    1 MLSFILIQNRQGKTRLAKWYVPYSDEEKIKLKGEIHRLVAPRDQKYQSNFVEFRN-----HKVVYRRYAGLFFCACVDTNDNELAYLEAIHFFVEVLDSFFGNVCELDLVFNFYKVYAILDEVFLAGEIEETSKQVVLTRLEHLDK 141          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_DICDI (AP-2 complex subunit sigma OS=Dictyostelium discoideum GN=ap2s1 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.124e-20
Identity = 53/142 (37.32%), Postives = 89/142 (62.68%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYD-FQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVE 530
            MI  +++ N QGK RL+K+Y  ++ VEK++ L   +  ++  R    +NFVE  +      R+VY+ +A L+F    D ++NEL  L+ I +FVE LD  F NVCELD+V+N+ K++ I+DE+   G+++E S   +++ +E
Sbjct:    1 MIHFILIQNRQGKTRLSKWYTPYEDVEKRK-LSHEIHKIVNSRETKFTNFVEFRT-----HRIVYRRYAGLFFSVCVDPTDNELFCLEAIHLFVEVLDAYFGNVCELDLVFNFYKVYAIIDEVFLAGELMEPSKHVILQRME 136          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S2_DICDI (AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum GN=ap1s2 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.504e-20
Identity = 48/138 (34.78%), Postives = 85/138 (61.59%), Query Frame = 3
Query:  120 VMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEE 533
            +++++ QGK RL K+Y     +++    R +  ++  R   + NF+E         ++++K +A+LYFV   D  +NEL +L++I  FVE LD+ F NVCELD+++N+ K + ILDE+I  G++ ETS   V++ + +
Sbjct:    6 LLLLSRQGKTRLTKWYSPFTNKEKSRFTREIGNMVLNRPPKLCNFLEWKEY-----KIIFKRYASLYFVVCCDREDNELIVLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDELIMAGELQETSKKTVLRLISQ 138          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP4S1_HUMAN (AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.120e-19
Identity = 50/149 (33.56%), Postives = 86/149 (57.72%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK  +++N QG+ RL+K+Y+   + K+  L   V      R++   +F+E         +L+Y+ +A L+ V   + +ENE+A+ + I  FVE LD+ F  V ELDI++N  K+H ILDE++  G ++ET+   ++  +  + K S S
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVDINKRTLLETEVIKSCLSRSNEQCSFIEYKDF-----KLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDEYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKMSES 144          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP4S1_BOVIN (AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.616e-19
Identity = 50/149 (33.56%), Postives = 85/149 (57.05%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK  +++N QG+ RL+K+Y+   + K+  L   V      R++   +F+E         +L+Y+ +A L+ V   + +ENE+A+ + I  FVE LD  F  V ELDI++N  K+H ILDE++  G ++ET+   ++  +  + K S S
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVEINKRTLLETEVIKSCLSRSNEQCSFIEYKDF-----KLIYRQYAALFIVVGVNDTENEMAIYEFIHNFVEVLDDYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKMSDS 144          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S1_MAIZE (AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.052e-18
Identity = 52/134 (38.81%), Postives = 82/134 (61.19%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKL--HTILDEIIFGGQVLETS 503
            MI+ +++ N QGK RLAK+Y      ++ ++   V  ++  R    +NFVE  +      +++Y+ +A L+F    D ++NELA L+ I +FVE LD  F NVCELD+V+N+ K+  + ILDE I  G++ ETS
Sbjct:    1 MIRFILLQNRQGKTRLAKYYVPLEDSEKHKVEYEVHRLVVNRDPKFTNFVEFRT-----HKVIYRRYAGLFFSICVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYRYLILDEFILAGELQETS 129          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP4S1_MOUSE (AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap4s1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.374e-18
Identity = 50/149 (33.56%), Postives = 84/149 (56.38%), Query Frame = 3
Query:  108 MIKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISKCSPS 554
            MIK  +++N QG+ RL+K+Y+   + K+  L   V      R+    +F+E         +L+Y+ +A L+ V   + +ENE+A+ + I  FVE LD  F  V ELDI++N  K+H ILDE++  G ++ET+   ++  +  + K S S
Sbjct:    1 MIKFFLMVNKQGQTRLSKYYEHVDINKRALLETEVSKSCLSRSSEQCSFIEYKDF-----KLIYRQYAALFVVVGVNDTENEMAIYEFIHNFVEVLDGYFSRVSELDIMFNLDKVHIILDEMVLNGCIVETNRARILAPLLILDKLSES 144          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP4S_DICDI (AP-4 complex subunit sigma OS=Dictyostelium discoideum GN=ap4s1 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.221e-18
Identity = 49/144 (34.03%), Postives = 85/144 (59.03%), Query Frame = 3
Query:  111 IKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETSSIEVIKAVEEISK 542
            IK  +++N +GK RL+++Y+  P E++  +   +      R +   +FVE         +++Y+ +ATL+F+   D++ENELA+L+LI  +VE LD CF NV    I++N  K H ILDE++  G ++E S   +++ V  + K
Sbjct:    3 IKYFLLVNIRGKTRLSQYYESIPFEERPAMESEIIRKCLSRTEIQCSFVEYKDY-----KVIYRKYATLFFIVGVDTTENELAILELIHNYVEILDSCFDNV----IMFNLDKAHFILDEMVSNGDIVEISKQHILEFVNLLYK 137          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP2S_YEAST (AP-2 complex subunit sigma OS=Saccharomyces cerevisiae GN=APS2 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.819e-18
Identity = 51/134 (38.06%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  111 IKSVMVMNTQGKPRLAKFYDFQPVEKQ--QELIRSVFGVLCGRAD-NVSNFVEADSIFGPGTRLVYKHFATLYFVFVFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIFGGQVLETS 503
            ++ ++  N QG  RL +++D    + Q  Q+ I  ++ ++  R   + SNFVE    F   T+L+Y+ +A LYFV   D  ++E   L  I +FVE LD  F NVCELDIV+N+ K++ I+DE+  GG++ E S
Sbjct:    3 VQFILCFNKQGVVRLVRWFDVHSSDPQRSQDAIAQIYRLISSRDHKHQSNFVE----FSDSTKLIYRRYAGLYFVMGVDLLDDEPIYLCHIHLFVEVLDAFFGNVCELDIVFNFYKVYMIMDEMFIGGEIQEIS 132          
BLAST of DY259786 vs. ExPASy Swiss-Prot
Match: AP1S1_YEAST (AP-1 complex subunit sigma-1 OS=Saccharomyces cerevisiae GN=APS1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.984e-17
Identity = 49/141 (34.75%), Postives = 87/141 (61.70%), Query Frame = 3
Query:  111 IKSVMVMNTQGKPRLAKFYDFQPVEKQQELIRSVFGVLCGRADNVSNFVEADSIFGPGTRLVYKHFATLYFVF-VFDSSENELAMLDLIQVFVETLDKCFKNVCELDIVYNYSKLHTILDEIIF-GGQVLETSSIEVIKAV 527
            +K +++++ QGK RL K+Y      ++ ++++ +   +  R   + N +E +       ++VYK +A+LYF+  +    +NEL  L++I  FVET+D  F NVCELDI++N+SK++ IL+E+I   G + E+S  EV+  V
Sbjct:    4 LKYLLLVSRQGKIRLKKWYTAMSAGEKAKIVKDLTPTILARKPKMCNIIEYND-----HKVVYKRYASLYFIVGMTPDVDNELLTLEIIHRFVETMDTYFGNVCELDIIFNFSKVYDILNEMIMCDGSIAESSRKEVLHHV 139          
The following BLAST results are available for this feature:
BLAST of DY259786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
AP2S_NEUCR8.607e-2138.36AP-2 complex subunit sigma OS=Neurospora crassa GN... [more]
AP2S_DICDI1.124e-2037.32AP-2 complex subunit sigma OS=Dictyostelium discoi... [more]
AP1S2_DICDI2.504e-2034.78AP-1 complex subunit sigma-2 OS=Dictyostelium disc... [more]
AP4S1_HUMAN2.120e-1933.56AP-4 complex subunit sigma-1 OS=Homo sapiens GN=AP... [more]
AP4S1_BOVIN3.616e-1933.56AP-4 complex subunit sigma-1 OS=Bos taurus GN=AP4S... [more]
AP2S1_MAIZE1.052e-1838.81AP-2 complex subunit sigma-1 OS=Zea mays GN=AP-17 ... [more]
AP4S1_MOUSE1.374e-1833.56AP-4 complex subunit sigma-1 OS=Mus musculus GN=Ap... [more]
AP4S_DICDI5.221e-1834.03AP-4 complex subunit sigma OS=Dictyostelium discoi... [more]
AP2S_YEAST6.819e-1838.06AP-2 complex subunit sigma OS=Saccharomyces cerevi... [more]
AP1S1_YEAST1.984e-1734.75AP-1 complex subunit sigma-1 OS=Saccharomyces cere... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259786 ID=DY259786; Name=DY259786; organism=Citrus clementina; type=EST; length=950bp
AATTGTATATTTAAAAAAAAAAAGAAAGGAAGCCATTGATCACTGTCTGA
TCAGTCGATCTGTAGTTTACTTGCTTGGAGCGGGAATAGAAAGCCAAAGG
AATAAAAATGATAAAATCGGTGATGGTTATGAACACGCAGGGCAAGCCTC
GCCTCGCGAAATTTTACGATTTTCAGCCCGTGGAGAAGCAGCAAGAGCTA
ATACGCAGCGTTTTCGGAGTCTTATGCGGTAGAGCTGATAATGTCAGCAA
TTTTGTTGAGGCTGATTCAATTTTCGGCCCGGGTACACGCCTTGTATATA
AGCACTTTGCAACTCTGTACTTCGTCTTCGTATTTGACAGTTCTGAAAAT
GAGCTAGCTATGCTTGATCTTATACAAGTTTTCGTGGAGACTTTAGACAA
ATGCTTCAAAAATGTATGTGAGCTCGACATTGTGTACAACTACAGCAAGT
TGCACACTATTCTTGATGAGATTATTTTTGGAGGTCAAGTGCTGGAAACA
AGTTCTATAGAAGTGATCAAGGCTGTTGAAGAAATATCAAAGTGCTCTCC
CTCTCTCTCCCTCTACCTGTTTGTCTTTCTTCGGGCCTAGTACTCGCCCA
CTTTTGTTATGTTATAACTAATAGATGATTCTGCCTGTTGCAGGCTGGAA
TCCGCCCCAAACGCTATCGCACTTGTCTCCAAGTCTGTTTCTGGTTGGCG
AAATCCGTAGCCTGTAGTAATGCACCTGTTAAAAAAATCCATGTCCCAAT
TTGAATTTGAAATGCAATTACCTTCCCTTTCCAAACTTATTTGTGTTGGA
AAGGGTGGTAGCCGGGATTTCAATTGGCCCGCCATATGAACCCGGGTTCC
AAATTTGGGAAAAATTTTTCCTCCTTGACCCCCTAAAATTGGATTCCAAC
CCATAAAAAAAAACCCCTGGGGGCCACCTACCAAAACCCGGAGGGCGGAG
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