DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_PINCO (Actin (Fragment) OS=Pinus contorta PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.045e-16
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF   E++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GGST+FP  A+R+ +E+  L P   ++K+    E
Sbjct:   40 RFRCAEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPE 120

HSP 2 Score: 41.2022 bits (95), Expect = 2.045e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + K EYEE+G +   R+ F
Sbjct:  125 VWIGGSILASLSTFQQMWIAKTEYEESGPSIVHRKCF 161
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_SCHCO (Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 2.577e-16
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LG+  AG+ E    ++  C   +   LY +++L+GG+T+FP  A+R+++EL  L P   +VKI    E
Sbjct:  252 NERFRAPEALFQPAFLGLEAAGIHETTYNSIFKCDLDIRRDLYGNVVLSGGTTMFPGIADRMQKELTALSPSSMKVKIVAPPE 334

HSP 2 Score: 36.5798 bits (83), Expect = 2.577e-16
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ +  +K EY+E+G     R+ F
Sbjct:  339 VWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_PHYME (Actin OS=Phytophthora megasperma PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.577e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++F+P+ +G    G+ EC  + +  C   +   LY +++L+GGST+FP   +R+ +E+  L P   +VKI T  E
Sbjct:  252 NERFRTPEVLFKPSMIGRECTGVHECAFQTIMKCDVDIRRDLYNNVVLSGGSTMFPGIGDRMTKEMTKLAPTAMKVKIITPPE 334

HSP 2 Score: 38.891 bits (89), Expect = 2.577e-16
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K +Y+E+G +   R+ F
Sbjct:  339 VWIGGSILASLATFQHMWISKTDYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_MANSE (Actin, muscle OS=Manduca sexta PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.577e-16
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY + +++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_BOMMO (Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 2.577e-16
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY + +++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_PISOC (Actin, muscle OS=Pisaster ochraceus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA +GM  AG+ E    ++  C   +   LY + +L+GG++++P  A+R+++E++ L P   ++KI    E
Sbjct:  253 NERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEIQALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_HELTB (Actin, cytoskeletal OS=Heliocidaris tuberculata PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA +GM  AG+ E    ++  C   +   LY + +L+GG++++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_HELER (Actin, cytoskeletal OS=Heliocidaris erythrogramma PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA +GM  AG+ E    ++  C   +   LY + +L+GG++++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_BRALA (Actin, cytoplasmic OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_BRAFL (Actin, cytoplasmic OS=Branchiostoma floridae PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACT_PINCO2.045e-1635.80Actin (Fragment) OS=Pinus contorta PE=3 SV=1[more]
ACT1_SCHCO2.577e-1639.76Actin-1 OS=Schizophyllum commune GN=ACT1 PE=2 SV=1[more]
ACT_PHYME2.577e-1636.14Actin OS=Phytophthora megasperma PE=3 SV=1[more]
ACT_MANSE2.577e-1633.73Actin, muscle OS=Manduca sexta PE=2 SV=1[more]
ACT1_BOMMO2.577e-1633.73Actin, muscle-type A1 OS=Bombyx mori PE=3 SV=1[more]
ACTM_PISOC2.577e-1634.94Actin, muscle OS=Pisaster ochraceus PE=3 SV=1[more]
ACTM_HELTB2.577e-1634.94Actin, cytoskeletal OS=Heliocidaris tuberculata PE... [more]
ACTM_HELER2.577e-1634.94Actin, cytoskeletal OS=Heliocidaris erythrogramma ... [more]
ACTC_BRALA2.577e-1636.14Actin, cytoplasmic OS=Branchiostoma lanceolatum PE... [more]
ACTC_BRAFL2.577e-1636.14Actin, cytoplasmic OS=Branchiostoma floridae PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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