DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_BRABE (Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 30/83 (36.14%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRCPESLFQPSFLGMESTGVHETTYNSIMKCDIDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTB3_TAKRU (Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  +G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_CAEEL (Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 2.577e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 2.577e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_LYTPI (Actin, muscle (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 2.650e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA +GM  AG+ E    ++  C   +   LY + +L+GG++++P  A+R+++E+  L P   ++KI    E
Sbjct:   49 NERFRCPETLFQPAFIGMESAGIHETTYNSIMKCDIDIRKDLYANTVLSGGTSMYPGIADRMQKEITALAPSSMKIKIIAPPE 131

HSP 2 Score: 40.0466 bits (92), Expect = 2.650e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  136 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 172
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_DAUCA (Actin-1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.349e-16
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  P+++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GGST+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  255 RFRCPQVLFQPSMIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPE 335

HSP 2 Score: 37.7354 bits (86), Expect = 3.349e-16
Identity = 16/35 (45.71%), Postives = 24/35 (68.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 461
            +W GGS+LAS   FQ M ++K EY+E+G +   R+
Sbjct:  341 LWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTS_CYPCA (Actin, alpha skeletal muscle OS=Cyprinus carpio GN=acta1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.349e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 3.349e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTS_CARAU (Actin, alpha skeletal muscle OS=Carassius auratus GN=acta1 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.349e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRCPETLFQPSFIGMESAGIHETAYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 3.349e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_CIOSA (Actin, muscle OS=Ciona savignyi PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.349e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  255 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 337

HSP 2 Score: 40.4318 bits (93), Expect = 3.349e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  342 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 378
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_XENLA (Actin, alpha sarcomeric/skeletal OS=Xenopus laevis PE=2 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 3.349e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 3.349e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 3.349e-16
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM   G+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 3.349e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACTC_BRABE2.577e-1636.14Actin, cytoplasmic OS=Branchiostoma belcheri PE=2 ... [more]
ACTB3_TAKRU2.577e-1634.94Actin, cytoplasmic 3 OS=Takifugu rubripes GN=actbc... [more]
ACT1_CAEEL2.577e-1636.14Actin-1/3 OS=Caenorhabditis elegans GN=act-1 PE=1 ... [more]
ACTM_LYTPI2.650e-1634.94Actin, muscle (Fragment) OS=Lytechinus pictus PE=3... [more]
ACT1_DAUCA3.349e-1635.80Actin-1 OS=Daucus carota PE=2 SV=1[more]
ACTS_CYPCA3.349e-1634.94Actin, alpha skeletal muscle OS=Cyprinus carpio GN... [more]
ACTS_CARAU3.349e-1634.94Actin, alpha skeletal muscle OS=Carassius auratus ... [more]
ACTM_CIOSA3.349e-1634.94Actin, muscle OS=Ciona savignyi PE=2 SV=1[more]
ACT3_XENLA3.349e-1634.94Actin, alpha sarcomeric/skeletal OS=Xenopus laevis... [more]
ACT3_ORYSJ3.349e-1634.57Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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