DY259794 | Citrus Genome Database

Overview


Name	DY259794
Unique Name	DY259794
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1076

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT8_XENLA (Actin, cytoplasmic type 8 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.350e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.350e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_XENLA (Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.350e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.350e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT4_ARTSX (Actin, clone 403 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.350e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.350e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_LIMPO (Actin-3 OS=Limulus polyphemus PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.350e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  +G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESSGIHETTYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.350e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_DROME (Actin-42A OS=Drosophila melanogaster GN=Act42A PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 3.350e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPESLFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIVAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.350e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTB_CERPY (Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus GN=ACTB PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 3.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  238 NERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 320

HSP 2 Score: 40.0466 bits (92), Expect = 3.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  325 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 361

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_PROCL (Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.364e-16
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   L+ +I+++GG+T++P  A+RL++E+  L P   ++KI    E
Sbjct:  199 NERFRCPEALFQPSFLGMESVGVHETVHSSIMRCDIDIRKDLFANIVVSGGTTMYPGIADRLQKEITALAPATIKIKIIAPPE 281

HSP 2 Score: 41.5874 bits (96), Expect = 3.364e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E+G     R+ F
Sbjct:  286 VWIGGSILASLSTFQTMWITKEEYDESGPGIVHRKCF 322

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_YEAST (Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.354e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +F P+ LG+  AG+ +    ++  C   +   LY +I+++GG+T+FP  AER+++E+  L P   +VKI    E
Sbjct:  252 NERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAPPE 334

HSP 2 Score: 38.1206 bits (87), Expect = 4.354e-16
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +    + F
Sbjct:  339 VWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_SACBA (Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.354e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +F P+ LG+  AG+ +    ++  C   +   LY +I+++GG+T+FP  AER+++E+  L P   +VKI    E
Sbjct:  252 NERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAPPE 334

HSP 2 Score: 38.1206 bits (87), Expect = 4.354e-16
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +    + F
Sbjct:  339 VWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_CANGA (Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.354e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +F P+ LG+  AG+ +    ++  C   +   LY +I+++GG+T+FP  AER+++E+  L P   +VKI    E
Sbjct:  252 NERFRAPEALFHPSVLGLESAGIDQTTYNSIMKCDVDVRKELYGNIVMSGGTTMFPGIAERMQKEITALAPSSMKVKIIAPPE 334

HSP 2 Score: 38.1206 bits (87), Expect = 4.354e-16
Identity = 17/37 (45.95%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +    + F
Sbjct:  339 VWIGGSILASLTTFQQMWISKQEYDESGPSIVHHKCF 375

The following BLAST results are available for this feature:

BLAST of DY259794 vs. ExPASy Swiss-Prot

BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373


Match Name	E-value	Identity	Description
ACT8_XENLA	3.350e-16	34.94	Actin, cytoplasmic type 8 OS=Xenopus laevis PE=3 S...	[more]
ACT5_XENLA	3.350e-16	34.94	Actin, cytoplasmic type 5 OS=Xenopus laevis PE=3 S...	[more]
ACT4_ARTSX	3.350e-16	34.94	Actin, clone 403 OS=Artemia sp. PE=2 SV=1	[more]
ACT3_LIMPO	3.350e-16	34.94	Actin-3 OS=Limulus polyphemus PE=1 SV=1	[more]
ACT2_DROME	3.350e-16	34.94	Actin-42A OS=Drosophila melanogaster GN=Act42A PE=...	[more]
ACTB_CERPY	3.354e-16	34.94	Actin, cytoplasmic 1 OS=Cercopithecus pygerythrus ...	[more]
ACT_PROCL	3.364e-16	34.94	Actin (Fragment) OS=Procambarus clarkii PE=1 SV=1	[more]
ACT_YEAST	4.354e-16	36.14	Actin OS=Saccharomyces cerevisiae GN=ACT1 PE=1 SV=...	[more]
ACT_SACBA	4.354e-16	36.14	Actin OS=Saccharomyces bayanus GN=ACT1 PE=3 SV=1	[more]
ACT_CANGA	4.354e-16	36.14	Actin OS=Candida glabrata GN=ACT1 PE=3 SV=1	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA