DY259794 | Citrus Genome Database

Overview


Name	DY259794
Unique Name	DY259794
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1076

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_ASPOR (Actin OS=Aspergillus oryzae GN=act1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG+ Q G+ E    ++  C   +   LY +I+++GG+TL+P  A+RL +EL  L P   ++K     E
Sbjct:  252 NERFRAPEALFQPSLLGIEQGGIHETTFNSIQKCDVDVRKDLYGNIVMSGGTTLYPGIADRLHKELVNLSPSSMKIKTIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTB2_TAKRU (Actin, cytoplasmic 2 OS=Takifugu rubripes GN=actbb PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRCPEALFQPSFLGMESCGIHETTFNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITSLAPTTMKIKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5C_ANOGA (Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT4_BOMMO (Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3B_HELAM (Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=actA3b PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_DROME (Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 SV=4)

HSP 1 Score: 65.855 bits (159), Expect = 4.354e-16
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 4.354e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_NAEFO (Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.355e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++FQP  +GM  AG+ E    ++  C  ++   LY +++L+GG+T+F   AER+ +EL  + P   ++K+    E
Sbjct:  248 NERFRCPEVLFQPNFIGMEAAGVHETTFNSIGKCDIHIRKDLYGNVVLSGGTTMFEGIAERMTKELTNMAPASMKIKVVAPPE 330

HSP 2 Score: 39.2762 bits (90), Expect = 4.355e-16
Identity = 19/37 (51.35%), Postives = 22/37 (59.46%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EYE+ G     R  F
Sbjct:  335 VWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRESF 371

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_CYAME (Actin OS=Cyanidioschyzon merolae PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.658e-16
Identity = 27/81 (33.33%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM   G+     +++  C   +   LY +++L+GG+T+FP  A+R++REL  + P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSLIGMEGEGIHNVAYQSIMKCDVDIRKDLYANVVLSGGTTMFPGIADRMQRELASVAPSSVKIKLVAPAE 336

HSP 2 Score: 40.4318 bits (93), Expect = 5.658e-16
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++KAEY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISKAEYDEFGPSVVHRKCF 377

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTS_RAT (Actin, alpha skeletal muscle OS=Rattus norvegicus GN=Acta1 PE=2 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.658e-16
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 5.658e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTS_RABIT (Actin, alpha skeletal muscle OS=Oryctolagus cuniculus GN=ACTA1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.658e-16
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 5.658e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 377

The following BLAST results are available for this feature:

BLAST of DY259794 vs. ExPASy Swiss-Prot

BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373


Match Name	E-value	Identity	Description
ACT_ASPOR	4.354e-16	37.35	Actin OS=Aspergillus oryzae GN=act1 PE=3 SV=1	[more]
ACTB2_TAKRU	4.354e-16	34.94	Actin, cytoplasmic 2 OS=Takifugu rubripes GN=actbb...	[more]
ACT5C_ANOGA	4.354e-16	34.94	Actin-5C OS=Anopheles gambiae GN=Act5C PE=2 SV=1	[more]
ACT4_BOMMO	4.354e-16	34.94	Actin, cytoplasmic A4 OS=Bombyx mori GN=A4 PE=2 SV...	[more]
ACT3B_HELAM	4.354e-16	34.94	Actin-A3b, cytoplasmic OS=Helicoverpa armigera GN=...	[more]
ACT1_DROME	4.354e-16	34.94	Actin-5C OS=Drosophila melanogaster GN=Act5C PE=1 ...	[more]
ACT2_NAEFO	4.355e-16	34.94	Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1	[more]
ACT_CYAME	5.658e-16	33.33	Actin OS=Cyanidioschyzon merolae PE=3 SV=1	[more]
ACTS_RAT	5.658e-16	33.73	Actin, alpha skeletal muscle OS=Rattus norvegicus ...	[more]
ACTS_RABIT	5.658e-16	33.73	Actin, alpha skeletal muscle OS=Oryctolagus cunicu...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA