DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_STYPL (Actin, muscle OS=Styela plicata PE=3 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 7.774e-15
Identity = 28/83 (33.73%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  +G+ E    ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   + KI    E
Sbjct:  256 NERFRCPETLFQPSFIGMESSGVHETTYNSIMKCDIDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTMKSKIIAPPE 338

HSP 2 Score: 39.2762 bits (90), Expect = 7.774e-15
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW G S+LAS   FQ M +TK EY+E+G +   R+ F
Sbjct:  343 VWIGASILASLSTFQQMWITKQEYDESGPSIVHRKCF 379
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 7.775e-15
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LG+  AG+ E    ++  C   +   LY +++L+GG+T+F   A+R+++EL  L P   +VKI    E
Sbjct:  252 NERFRAPEALFQPAFLGLEAAGIHETTYNSIFKCDLDIRRDLYGNVVLSGGTTMFSGIADRMQKELLALSPASMRVKIVAPLE 334

HSP 2 Score: 36.5798 bits (83), Expect = 7.775e-15
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ +  +K EY+E+G     R+ F
Sbjct:  339 VWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_PUCGR (Actin OS=Puccinia graminis PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.775e-15
Identity = 26/83 (31.33%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG+  +G+ E    ++  C   +   LY +++++GG+T++   ++R+++E+  L P   +VKI    E
Sbjct:  252 NERFRCPEALFQPSLLGLEASGIHETTYNSIMKCDLDIRKDLYGNVVMSGGTTMYSGISDRMQKEITALAPSSMKVKIVAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTG_PENCH (Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=3 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.775e-15
Identity = 27/83 (32.53%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP  LG+   G+      ++  C   +   LY +I+++GG+T++P  ++R+++E+  L P   +VKI    E
Sbjct:  252 NERFRAPEALFQPNVLGLESGGIHVTTFNSIMKCDVDVRKDLYGNIVMSGGTTMYPGISDRMQKEITALAPSSMKVKIIAPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_LUMTE (Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 7.775e-15
Identity = 28/83 (33.73%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +F  + LGM   G+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEAMFHASFLGMESVGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_PLAYO (Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.775e-15
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG   AG+      ++  C   +   LY +I+L+GG+T++    ERL R++  L P   ++K+    E
Sbjct:  253 NERFRCPEALFQPSFLGKEAAGIHTTTFNSIKKCDVDIRKDLYGNIVLSGGTTMYEGIGERLTRDITTLAPSTMKIKVVAPPE 335

HSP 2 Score: 40.4318 bits (93), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M +TK EY+E+G +   R+ F
Sbjct:  340 VWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_PLAFX (Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.775e-15
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG   AG+      ++  C   +   LY +I+L+GG+T++    ERL R++  L P   ++K+    E
Sbjct:  253 NERFRCPEALFQPSFLGKEAAGIHTTTFNSIKKCDVDIRKDLYGNIVLSGGTTMYEGIGERLTRDITTLAPSTMKIKVVAPPE 335

HSP 2 Score: 40.4318 bits (93), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M +TK EY+E+G +   R+ F
Sbjct:  340 VWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_PLAF7 (Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=PFL2215w PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 7.775e-15
Identity = 28/83 (33.73%), Postives = 45/83 (54.22%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG   AG+      ++  C   +   LY +I+L+GG+T++    ERL R++  L P   ++K+    E
Sbjct:  253 NERFRCPEALFQPSFLGKEAAGIHTTTFNSIKKCDVDIRKDLYGNIVLSGGTTMYEGIGERLTRDITTLAPSTMKIKVVAPPE 335

HSP 2 Score: 40.4318 bits (93), Expect = 7.775e-15
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M +TK EY+E+G +   R+ F
Sbjct:  340 VWIGGSILSSLSTFQQMWITKEEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.010e-14
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF   E +FQP+ LGM  AG+ E +  ++  C   +   LY + +L+GG+T+FP   +R+++E+  L P   ++KI    E
Sbjct:  257 NERFRCAEALFQPSFLGMESAGVHETVYNSIMKCDIDVRKDLYANNVLSGGTTMFPGIGDRMQKEMVSLAPSTMKIKIIAPPE 339

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-14
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 3 
Query:  360 WRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            W GGS+LAS   F AM + K+EY+E G A   R+ F
Sbjct:  345 WIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 380
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_BRABE (Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.010e-14
Identity = 29/83 (34.94%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF   E +FQP+ LGM  AG+ E +  ++  C   +   LY + +L+GG+T+FP   +R+++E+  L P   ++KI    E
Sbjct:  256 NERFRCAEALFQPSFLGMESAGVHETVYNSIMKCDIDVRKDLYANNVLSGGTTMFPGIGDRMQKEMVSLAPSTMKIKIIAPPE 338

HSP 2 Score: 38.1206 bits (87), Expect = 1.010e-14
Identity = 18/36 (50.00%), Postives = 23/36 (63.89%), Query Frame = 3 
Query:  360 WRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            W GGS+LAS   F AM + K+EY+E G A   R+ F
Sbjct:  344 WIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 379
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACTM_STYPL7.774e-1533.73Actin, muscle OS=Styela plicata PE=3 SV=1[more]
ACT_COPC77.775e-1538.55Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]
ACT_PUCGR7.775e-1531.33Actin OS=Puccinia graminis PE=3 SV=1[more]
ACTG_PENCH7.775e-1532.53Actin, gamma OS=Penicillium chrysogenum GN=ACT PE=... [more]
ACT2_LUMTE7.775e-1533.73Actin-2 OS=Lumbricus terrestris GN=ACT2 PE=2 SV=1[more]
ACT1_PLAYO7.775e-1533.73Actin-1 OS=Plasmodium yoelii yoelii GN=PY02240 PE=... [more]
ACT1_PLAFX7.775e-1533.73Actin-1 OS=Plasmodium falciparum (isolate HB3) PE=... [more]
ACT1_PLAF77.775e-1533.73Actin-1 OS=Plasmodium falciparum (isolate 3D7) GN=... [more]
ACTM_BRALA1.010e-1434.94Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]
ACTM_BRABE1.010e-1434.94Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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