DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 41.5874 bits (96), Expect = 3.160e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 41.5874 bits (96), Expect = 3.160e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSFIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 41.5874 bits (96), Expect = 3.160e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 41.5874 bits (96), Expect = 3.160e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSJ (Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM   G+ E    ++  C   +   LY +I+L+GGST+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 43.1282 bits (100), Expect = 3.160e-17
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +++AEYEE+G A   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_ORYSI (Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 3.160e-17
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM   G+ E    ++  C   +   LY +I+L+GGST+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVMFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 43.1282 bits (100), Expect = 3.160e-17
Identity = 20/37 (54.05%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +++AEYEE+G A   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISRAEYEESGPAIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_LYTPI (Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 3.161e-17
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY + +L+GGST+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 3.161e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_PEA (Actin-2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.161e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  255 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 335

HSP 2 Score: 41.5874 bits (96), Expect = 3.161e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++KAEY+E G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_PEA (Actin-1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.161e-17
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  255 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 335

HSP 2 Score: 41.5874 bits (96), Expect = 3.161e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++KAEY+E G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKAEYDERGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_ABSGL (Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.109e-17
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG+  AG+ E    ++  C   +   LY +I+++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  254 NERFRAPEALFQPSFLGLESAGIHETTYNSIMKCDVDIRKDLYSNIVMSGGTTMYPGIADRMQKEITALAPSSMKIKIVAPPE 336

HSP 2 Score: 40.0466 bits (92), Expect = 4.109e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACT_GOSHI3.160e-1735.80Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT1_ORYSJ3.160e-1735.80Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI3.160e-1735.80Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT11_SOLTU3.160e-1735.80Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]
ACT2_ORYSJ3.160e-1735.80Actin-2 OS=Oryza sativa subsp. japonica GN=ACT2 PE... [more]
ACT2_ORYSI3.160e-1735.80Actin-2 OS=Oryza sativa subsp. indica GN=ACT2 PE=3... [more]
ACT1_LYTPI3.161e-1738.55Actin, cytoskeletal 1 OS=Lytechinus pictus PE=2 SV... [more]
ACT2_PEA3.161e-1735.80Actin-2 OS=Pisum sativum PE=2 SV=1[more]
ACT1_PEA3.161e-1735.80Actin-1 OS=Pisum sativum PE=2 SV=1[more]
ACT2_ABSGL4.109e-1734.94Actin-2 OS=Absidia glauca GN=ACT2 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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