DY259794 | Citrus Genome Database

Overview


Name	DY259794
Unique Name	DY259794
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1076

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 316

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_TOBAC (Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 316

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 316

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT4_SOLTU (Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  237 RFRCPEVLFQPSIIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 317

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  322 VWIGGSILASLSTFQ 336

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_SOLLC (Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 316

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_SOLLC (Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.004e-12
Identity = 29/81 (35.80%), Postives = 49/81 (60.49%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 316

HSP 2 Score: 23.483 bits (49), Expect = 7.004e-12
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 9.058e-12
Identity = 27/80 (33.75%), Postives = 45/80 (56.25%), Query Frame = 1

Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI 243
            ++  RF  PE +FQP   G     + +    ++ +C   +   LY +IIL+GG+T+FP   ERL +E++ L P   +VK+
Sbjct:  254 ISTQRFQCPEFLFQPDLGGRECKSVHQLTYDSIMTCDLDVRKDLYANIILSGGTTMFPGLGERLYKEMKDLAPQTMKVKV 333

HSP 2 Score: 36.5798 bits (83), Expect = 9.058e-12
Identity = 21/52 (40.38%), Postives = 27/52 (51.92%), Query Frame = 3

Query:  312 PNW*NIFVLSSP--LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 461
            P    + V++SP     VWRGGS LA    F  M VTK +Y E G +   R+
Sbjct:  326 PQTMKVKVIASPDRKYAVWRGGSTLAKLSTFAGMWVTKEDYAEFGESIVHRK 377

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_OXYNO (Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.061e-12
Identity = 23/79 (29.11%), Postives = 40/79 (50.63%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADL-GMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI 243
            N RF  PE +F+P ++ G     +      ++  C   +   LY++I L+GG+T++    ERL +E+    P    VK+
Sbjct:  251 NARFRCPEYLFKPLEMNGKELDSIQSLTYNSIQECDVDVRRDLYQNITLSGGTTMYEGIGERLLKEIEARAPKSINVKV 329

HSP 2 Score: 43.8986 bits (102), Expect = 9.061e-12
Identity = 21/48 (43.75%), Postives = 31/48 (64.58%), Query Frame = 3

Query:  324 NIFVLSSP--LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 461
            N+ V++SP     VWRGGS L S   F +M +TK +Y+ENG++   R+
Sbjct:  326 NVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRK 373

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP6_SCHPO (Actin-like protein arp6 OS=Schizosaccharomyces pombe GN=arp6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.145e-11
Identity = 29/81 (35.80%), Postives = 56/81 (69.14%), Query Frame = 1

Query:    1 DLTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI 243
            +L+N RF++PE++F P+D+ + +AG+ E ++++V      + ++L E+++  GG+  FP F +RL  ELR L P +++VK+
Sbjct:  275 NLSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKV 355

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.171e-11
Identity = 29/75 (38.67%), Postives = 40/75 (53.33%), Query Frame = 1

Query:    4 LTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDD 228
            L   RFL  EM F+P+ +   Q GL    V  +N C   L   L  +I+L GGST+   F  RL++EL  + P+D
Sbjct:  314 LCQERFLCSEMFFKPSLIKSMQLGLHTQTVSCLNKCDIALKRDLMGNILLCGGSTMLSGFPNRLQKELSSMCPND 388

HSP 2 Score: 39.2762 bits (90), Expect = 1.171e-11
Identity = 21/47 (44.68%), Postives = 27/47 (57.45%), Query Frame = 3

Query:  327 IFVLSSPLLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            + VL      VW GGS+LAS   FQ + V ++EYEE+G     RR F
Sbjct:  392 VSVLPERDTAVWTGGSILASLQGFQPLWVHRSEYEEHGPFFLYRRCF 438

The following BLAST results are available for this feature:

BLAST of DY259794 vs. ExPASy Swiss-Prot

BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373


Match Name	E-value	Identity	Description
ACT8_SOLTU	7.004e-12	35.80	Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1	[more]
ACT5_TOBAC	7.004e-12	35.80	Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1	[more]
ACT5_SOLTU	7.004e-12	35.80	Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1	[more]
ACT4_SOLTU	7.004e-12	35.80	Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1	[more]
ACT3_SOLLC	7.004e-12	35.80	Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 S...	[more]
ACT1_SOLLC	7.004e-12	35.80	Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 S...	[more]
ACT_EUPCR	9.058e-12	33.75	Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1	[more]
ACT1_OXYNO	9.061e-12	29.11	Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1	[more]
ARP6_SCHPO	1.145e-11	35.80	Actin-like protein arp6 OS=Schizosaccharomyces pom...	[more]
ACL7A_BOVIN	1.171e-11	38.67	Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2...	[more]

Pages

Properties


Property Name	Value
Genbank description	KN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA