DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ARP4_ARATH (Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1)

HSP 1 Score: 47.7506 bits (112), Expect = 7.268e-11
Identity = 29/100 (29.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:   16 RFLVPEMIFQP------------ADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI-----TTQEEYS 264
            RF VP+++F P            A++  +  GL   ++ ++N C   +   LY SI+L GG++   +  ERLE++L    P   +VK+     TT+  +S
Sbjct:  305 RFKVPDVMFNPSIVQTIPGMEKYAEMIPSVRGLPHMVMESINKCDVDIRRELYSSILLAGGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFS 404          

HSP 2 Score: 40.4318 bits (93), Expect = 7.268e-11
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 3
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 461
            VW GGS+LAS   FQ M  +K+EYEE+G++  +R+
Sbjct:  405 VWIGGSILASLGSFQQMWFSKSEYEEHGASYIQRK 439          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT9_SOLTU (Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 7.335e-11
Identity = 28/81 (34.57%), Postives = 48/81 (59.26%), Query Frame = 1
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM  AG+ E    ++  C   +   LY +I+L+GG+T+F   A+R+ +E+  L P   ++K+    E
Sbjct:  236 RFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFNGIADRMSKEITALAPSSMKIKVVAPPE 316          

HSP 2 Score: 23.483 bits (49), Expect = 7.335e-11
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  357 VWRGGSLLASSPDFQ 401
            VW GGS+LAS   FQ
Sbjct:  321 VWIGGSILASLSTFQ 335          
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT29_DICDI (Putative actin-29 OS=Dictyostelium discoideum GN=act29 PE=3 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 9.474e-11
Identity = 27/87 (31.03%), Postives = 51/87 (58.62%), Query Frame = 1
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKI---TTQEEYSH 267
            RF+  E++F+P+ + +   G+ + +  ++ +C   +   LY +IIL+GG+T+ P F +R++ EL  L P   ++K+    T E  SH
Sbjct:  263 RFICGEVLFEPSLVNIESYGVHQLLYNSIINCDFEIRRGLYNNIILSGGTTMLPDFNDRIKNELINLSPSSMKIKVVENNTNENNSH 349          

HSP 2 Score: 31.9574 bits (71), Expect = 9.474e-11
Identity = 14/36 (38.89%), Postives = 21/36 (58.33%), Query Frame = 3
Query:  360 WRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            W GGS+ +S   F+   ++K EY E GS   +R+ F
Sbjct:  352 WIGGSIFSSLSTFEQQSISKQEYMEYGSKIIQRKCF 387          
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ARP4_ARATH7.268e-1129.00Actin-related protein 4 OS=Arabidopsis thaliana GN... [more]
ACT9_SOLTU7.335e-1134.57Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT29_DICDI9.474e-1131.03Putative actin-29 OS=Dictyostelium discoideum GN=a... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
back to top