DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_ACHBI (Actin OS=Achlya bisexualis PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.342e-17
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++FQPA +G   +G+ +C  + +  C   +   LY +I+L+GG+T++P  +ER+ +EL  L P   ++K+    E
Sbjct:  253 NERFRTPEVLFQPALIGKEASGIHDCTFQTIMKCDVDIRKDLYCNIVLSGGTTMYPGISERMTKELTALAPSTMKIKVVAPPE 335

HSP 2 Score: 40.817 bits (94), Expect = 5.342e-17
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M ++KAEY+E+G +   R+ F
Sbjct:  340 VWIGGSILSSLSTFQQMWISKAEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_MAYDE (Actin OS=Mayetiola destructor PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.945e-17
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY +I+++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVMSGGTTMYPGIADRMQKEITSLAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-17
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_DROME (Actin-87E OS=Drosophila melanogaster GN=Act87E PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.945e-17
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY +I+++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-17
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT3_DROME (Actin-57B OS=Drosophila melanogaster GN=Act57B PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.945e-17
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY +I+++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPESLFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANIVMSGGTTMYPGIADRMQKEITSLAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-17
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_SCHMA (Actin-2 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.945e-17
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESAGVHETTFNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITALAPSTMKIKIVAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 6.945e-17
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_STRPU (Actin, cytoskeletal 2A OS=Strongylocentrotus purpuratus GN=CYIIA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.945e-17
Identity = 32/83 (38.55%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LGM  AG+ E    ++  C   +   LY + +L+GGST++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRAPEALFQPAFLGMESAGIHETCYNSIMKCDVDIRKDLYANSVLSGGSTMYPIAADRMQKEITALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 6.945e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_PNECA (Actin-1 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 6.945e-17
Identity = 28/83 (33.73%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM   G+ E    ++  C   +   LY +I+++GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  252 NERFRAPEALFQPSIVGMETCGIHETTFNSIMKCDVDIRKDLYSNIVMSGGTTMYPGIADRMQKEITALAPSSMKIKIVAPPE 334

HSP 2 Score: 41.2022 bits (95), Expect = 6.945e-17
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+ENG +   R+ F
Sbjct:  339 VWIGGSILASLSTFQQMWISKQEYDENGPSIVYRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT6_DIPDE (Actin-6 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT6 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.946e-17
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LG+   G+ E    ++  C   +   LY +I+L+GGST++P  A+R+ +EL  L P   ++KI    E
Sbjct:  250 NERFRCPEALFQPSFLGLESVGIHETCYNSIMKCDLDIRKDLYSNIVLSGGSTMYPGIADRMNKELTSLAPSSMKIKIIAPPE 332

HSP 2 Score: 40.0466 bits (92), Expect = 6.946e-17
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L S   FQ M +TK EY+E+G +   R+ F
Sbjct:  337 VWIGGSILGSLSTFQQMWITKQEYDESGPSIVHRKCF 373
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_HELTI (Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.028e-17
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE ++QP+ LGM  AG+ E    ++  C   +   LY + +L+GGST+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEAMYQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 9.028e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTC_BIOGL (Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 9.028e-17
Identity = 32/83 (38.55%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE  FQP+ LGM  AG+ E    ++  C   +   LY + +L+GGST+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEATFQPSFLGMEAAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 9.028e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACT_ACHBI5.342e-1734.94Actin OS=Achlya bisexualis PE=3 SV=1[more]
ACT_MAYDE6.945e-1734.94Actin OS=Mayetiola destructor PE=2 SV=1[more]
ACT5_DROME6.945e-1734.94Actin-87E OS=Drosophila melanogaster GN=Act87E PE=... [more]
ACT3_DROME6.945e-1734.94Actin-57B OS=Drosophila melanogaster GN=Act57B PE=... [more]
ACT2_SCHMA6.945e-1737.35Actin-2 OS=Schistosoma mansoni PE=2 SV=1[more]
ACTC_STRPU6.945e-1738.55Actin, cytoskeletal 2A OS=Strongylocentrotus purpu... [more]
ACT1_PNECA6.945e-1733.73Actin-1 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT6_DIPDE6.946e-1737.35Actin-6 (Fragment) OS=Diphyllobothrium dendriticum... [more]
ACTC_HELTI9.028e-1737.35Actin, cytoplasmic OS=Helisoma trivolvis PE=3 SV=1[more]
ACTC_BIOGL9.028e-1738.55Actin, cytoplasmic OS=Biomphalaria glabrata PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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