DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_LUMTE (Actin-1 OS=Lumbricus terrestris GN=ACT1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.028e-17
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LGM  AG+ E    ++  C   +   LY + +++GG+T+FP  A+R+++E+  + P   ++KI    E
Sbjct:  253 NERFRCPESMFQPAFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVMSGGTTMFPGIADRMQKEITSMAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 9.028e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTY_MOUSE (Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.028e-17
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 DLTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            D+   RF  PE++FQP  +G    GL E +  A++     L   L+ +I+L+GGSTLF  F +RL  E++ L P D ++KI+  +E
Sbjct:  250 DVGPARFRAPELLFQPDLVGDESEGLHEVLAFAIHKSDMDLRRTLFSNIVLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQE 335

HSP 2 Score: 41.5874 bits (96), Expect = 9.028e-17
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 3 
Query:  348 LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            L   W GGS+LAS   F+ M V+K EYEE+GS    R+ F
Sbjct:  337 LYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTY_HUMAN (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.028e-17
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 DLTNVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            D+   RF  PE++FQP  +G    GL E +  A++     L   L+ +I+L+GGSTLF  F +RL  E++ L P D ++KI+  +E
Sbjct:  250 DVGPARFRAPELLFQPDLVGDESEGLHEVVAFAIHKSDMDLRRTLFANIVLSGGSTLFKGFGDRLLSEVKKLAPKDIKIKISAPQE 335

HSP 2 Score: 41.5874 bits (96), Expect = 9.028e-17
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 3 
Query:  348 LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            L   W GGS+LAS   F+ M V+K EYEE+GS    R+ F
Sbjct:  337 LYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_LUMRU (Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.030e-17
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LGM  AG+ E    ++  C   +   LY + +++GG+T+FP  A+R+++E+  + P   ++KI    E
Sbjct:  249 NERFRCPESMFQPAFLGMESAGIHETTFNSIMKCDVDIRKDLYANTVMSGGTTMFPGIADRMQKEITSMAPSGMKIKIIAPPE 331

HSP 2 Score: 40.0466 bits (92), Expect = 9.030e-17
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  336 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 372
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT18_DICDI (Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.173e-16
Identity = 33/83 (39.76%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ L M  AG+ E I  ++  C   +   L+ ++IL+GGST+FP  A+R+ +EL  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSLLAMESAGIHETIYNSIMKCDVDIRRYLFGNVILSGGSTMFPGIADRMNKELTALAPSTMKIKIIAPPE 335

HSP 2 Score: 38.1206 bits (87), Expect = 1.173e-16
Identity = 17/35 (48.57%), Postives = 23/35 (65.71%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRR 461
            VW GGS+LAS   FQ M ++K EY E+G +   R+
Sbjct:  340 VWVGGSILASLSSFQEMWISKEEYNESGPSIVHRK 374
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_COLSC (Actin OS=Coleochaete scutata PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.173e-16
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++F PA +GM  AG+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFNPALIGMESAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 40.4318 bits (93), Expect = 1.173e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + K+EY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.173e-16
Identity = 29/81 (35.80%), Postives = 48/81 (59.26%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP+ +GM   G+ E    ++  C   +   LY +I+L+GGST+FP  A+R+ +E+  L P   ++K+    E
Sbjct:  256 RFRCPEVLFQPSLIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 40.817 bits (94), Expect = 1.173e-16
Identity = 18/37 (48.65%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K+EY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_MESVI (Actin OS=Mesostigma viride PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 1.173e-16
Identity = 29/83 (34.94%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++F P  +GM  AG+ E    ++  C   +   LY +I+L+GGST+ P  A+R+ +E+  L P   ++K+    E
Sbjct:  254 NERFRCPEVLFNPGYVGMESAGIHETTYNSIMRCDVDIRKDLYGNIVLSGGSTMXPGIADRMSKEITALAPSSMKIKVVAPPE 336

HSP 2 Score: 42.3578 bits (98), Expect = 1.173e-16
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQAM + K+EY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQAMWIAKSEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT17_DICDI (Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.174e-16
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N  F  PE +FQP+ LGM  AG+ E    ++  C   +   LY++++L+GG+T+FP  A+R+ +EL  L P   ++KI    E
Sbjct:  251 NELFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYDNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPE 333

HSP 2 Score: 38.891 bits (89), Expect = 1.174e-16
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M ++K EY+E+G +   R+ F
Sbjct:  338 VWIGGSMLSSLSTFQQMWISKEEYDESGPSIVHRKCF 374
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_SCHMA (Actin-1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.174e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  +G+ E    ++  C   +   LY + +L+GGST++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMEASGIHETTYNSIMKCDVDIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACT1_LUMTE9.028e-1736.14Actin-1 OS=Lumbricus terrestris GN=ACT1 PE=2 SV=1[more]
ACTY_MOUSE9.028e-1738.37Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=... [more]
ACTY_HUMAN9.028e-1738.37Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=... [more]
ACT_LUMRU9.030e-1736.14Actin (Fragment) OS=Lumbricus rubellus PE=2 SV=1[more]
ACT18_DICDI1.173e-1639.76Actin-18 OS=Dictyostelium discoideum GN=act18 PE=3... [more]
ACT_COLSC1.173e-1635.80Actin OS=Coleochaete scutata PE=2 SV=1[more]
ACT7_ARATH1.173e-1635.80Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT_MESVI1.173e-1634.94Actin OS=Mesostigma viride PE=3 SV=1[more]
ACT17_DICDI1.174e-1637.35Actin-17 OS=Dictyostelium discoideum GN=act17 PE=3... [more]
ACT1_SCHMA1.174e-1636.14Actin-1 OS=Schistosoma mansoni PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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