DY259794 | Citrus Genome Database

Overview


Name	DY259794
Unique Name	DY259794
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	1076

Libraries


Library Name	Type
Fruit-TF	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig14790	contig	Ccv1_Contig14790:2..1077.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_HYDAT (Actin, non-muscle 6.2 OS=Hydra attenuata PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_CRAGI (Actin OS=Crassostrea gigas PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 30/83 (36.14%), Postives = 50/83 (60.24%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  +G+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+++E+  L P   ++K+    E
Sbjct:  253 NERFRCPEAMFQPSFLGMESSGIHETSYNSIMKCDVDIRKDLYANIVLSGGTTMFPGIADRMQKEVTALAPPTMKIKVIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTM_APLCA (Actin, muscle OS=Aplysia californica PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP  LGM  AG+ E    ++  C   +   LY + +L+GG+T+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPESLFQPILLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMFPGIADRMQKEITSLAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_PHYIN (Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++F P+ +G   +G+ EC  + +  C   +   LY +++L+GGST+FP   ER+ +E+  L P   +VKI T  E
Sbjct:  252 NERFRTPEVLFNPSMIGRECSGVHECAFQTIMKCDVDIRRDLYSNVVLSGGSTMFPGIGERMTKEVIKLAPTAMKVKIITPPE 334

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  339 VWIGGSILASLATFQHMWISKTEYDESGPSIVHRKCF 375

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_ONCVO (Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY + +L+GGST++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_LYTPI (Actin, cytoskeletal 2 OS=Lytechinus pictus PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.174e-16
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE + QP+ +GM  AG+ E    ++  C   +   LY + +L+GGST+FP  A+R++RE+  L P   ++KI    E
Sbjct:  253 NERFRCPETLLQPSFIGMESAGIHETCYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQREISALAPPTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTY_BOVIN (Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.174e-16
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++FQP  +G    GL E +V A++     L   L+ +I+L+GGSTLF  F +RL  E++ L P D ++KI+  +E
Sbjct:  255 RFRAPELLFQPDLIGDESEGLHEVLVFAIHKSDMDLRRTLFANIMLSGGSTLFKGFGDRLLSEVKKLAPKDVKIKISAPQE 335

HSP 2 Score: 41.5874 bits (96), Expect = 1.174e-16
Identity = 20/40 (50.00%), Postives = 25/40 (62.50%), Query Frame = 3

Query:  348 LLGVWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            L   W GGS+LAS   F+ M V+K EYEE+GS    R+ F
Sbjct:  337 LYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_TETPY (Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 SV=2)

HSP 1 Score: 65.0846 bits (157), Expect = 1.174e-16
Identity = 29/81 (35.80%), Postives = 47/81 (58.02%), Query Frame = 1

Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE++F+PA +G    G+ E    ++  C   +   LY +I+L+GG+T+FP  AERL +E+  L P   ++K+    E
Sbjct:  255 RFRCPELLFKPAFIGKEFPGIHELTFNSIMKCDVDVRKDLYNNIVLSGGTTMFPGIAERLSKEVSALAPSSMKIKVVAPPE 335

HSP 2 Score: 42.743 bits (99), Expect = 1.174e-16
Identity = 19/37 (51.35%), Postives = 26/37 (70.27%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+L+S   FQ M +TKAEY+E+G +   R+ F
Sbjct:  340 VWIGGSILSSLSTFQTMWITKAEYDESGPSIVHRKCF 376

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_DIPDE (Actin-5 (Fragment) OS=Diphyllobothrium dendriticum GN=ACT5 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.174e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY + +L+GGST++P  ++R+++E+  L P   ++KI    E
Sbjct:  248 NERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKIVAPPE 330

HSP 2 Score: 39.6614 bits (91), Expect = 1.174e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  335 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 371

BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_HALRO (Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.525e-16
Identity = 30/83 (36.14%), Postives = 49/83 (59.04%), Query Frame = 1

Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ +GM  AG+ E    ++  C   +   LY + +L+GGST++P  A+R+++E+  L P   ++KI    E
Sbjct:  255 NERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVLSGGSTMYPGIADRMQKEITALAPSTMKIKIIAPPE 337

HSP 2 Score: 40.4318 bits (93), Expect = 1.525e-16
Identity = 19/37 (51.35%), Postives = 24/37 (64.86%), Query Frame = 3

Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M +TK EY+E G +   R+ F
Sbjct:  342 VWIGGSILASLSTFQQMWITKQEYDEAGPSIVHRKCF 378

The following BLAST results are available for this feature:

BLAST of DY259794 vs. ExPASy Swiss-Prot

BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373


Match Name	E-value	Identity	Description
ACT_HYDAT	1.174e-16	36.14	Actin, non-muscle 6.2 OS=Hydra attenuata PE=3 SV=1	[more]
ACT_CRAGI	1.174e-16	36.14	Actin OS=Crassostrea gigas PE=2 SV=1	[more]
ACTM_APLCA	1.174e-16	37.35	Actin, muscle OS=Aplysia californica PE=2 SV=1	[more]
ACT2_PHYIN	1.174e-16	37.35	Actin-2 OS=Phytophthora infestans GN=ACTB PE=2 SV=...	[more]
ACT2_ONCVO	1.174e-16	37.35	Actin-2 OS=Onchocerca volvulus GN=act-2b PE=3 SV=1	[more]
ACT2_LYTPI	1.174e-16	37.35	Actin, cytoskeletal 2 OS=Lytechinus pictus PE=2 SV...	[more]
ACTY_BOVIN	1.174e-16	40.74	Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1	[more]
ACT2_TETPY	1.174e-16	35.80	Actin, cytoplasmic OS=Tetrahymena pyriformis PE=3 ...	[more]
ACT5_DIPDE	1.174e-16	36.14	Actin-5 (Fragment) OS=Diphyllobothrium dendriticum...	[more]
ACT1_HALRO	1.525e-16	36.14	Actin, muscle 1A OS=Halocynthia roretzi GN=MA1A PE...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA