DY259794

Overview
NameDY259794
Unique NameDY259794
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1076
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT_SCHDU (Actin OS=Scherffelia dubia PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.525e-16
Identity = 28/83 (33.73%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE++FQP  LG    G+ E    ++  C   +   LY +I+L+GG+T+FP  A+R+ +E+  + P   ++K+    E
Sbjct:  255 NERFRCPEVLFQPGLLGQESVGVHETTFNSIMKCDVDIRKDLYNNIVLSGGTTMFPGIADRMSKEITAVAPSSMKIKVVAPPE 337

HSP 2 Score: 41.5874 bits (96), Expect = 1.525e-16
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  342 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 378
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT6_SOLTU (Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 1.525e-16
Identity = 28/81 (34.57%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:   16 RFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            RF  PE+++QP+ +GM  AG+ E    ++  C   +   LY + +L+GGST+FP  A+R+ +E++ L P   ++K+    E
Sbjct:  256 RFRCPEVLYQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNHVLSGGSTMFPGIADRMSKEIQALAPSSMKIKVVAPPE 336

HSP 2 Score: 41.5874 bits (96), Expect = 1.525e-16
Identity = 19/37 (51.35%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M + KAEY+E+G +   R+ F
Sbjct:  341 VWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_SUIBO (Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.525e-16
Identity = 33/83 (39.76%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQPA LG+  AG+ E    ++  C   +   LY +++L+GG+T+FP  A+R+++EL  L P   +VKI    E
Sbjct:  252 NERFRAPEALFQPAFLGLESAGIHETTYNSIYKCDLDIRRDLYGNVVLSGGTTMFPGIADRMQKELTSLSPSSMKVKIVAPPE 334

HSP 2 Score: 36.5798 bits (83), Expect = 1.525e-16
Identity = 17/37 (45.95%), Postives = 23/37 (62.16%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ +  +K EY+E+G     R+ F
Sbjct:  339 VWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT1_ONCVO (Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-16
Identity = 31/83 (37.35%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM  AG+ E    ++  C   +   LY +I+L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESAGIHESTYNSIMKCDIDIRKDLYANIVLSGGTTMYPGIADRMQKEVTALAPSTMKIKIIAPPE 335

HSP 2 Score: 38.5058 bits (88), Expect = 1.525e-16
Identity = 17/37 (45.95%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ + ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQVWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT5_BACDO (Actin-5, muscle-specific OS=Bactrocera dorsalis PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.525e-16
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E + +++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRTPEALFQPSFLGMESCGIHETVYQSIMKCDVDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT4_DROME (Actin, larval muscle OS=Drosophila melanogaster GN=Act79B PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.525e-16
Identity = 29/83 (34.94%), Postives = 50/83 (60.24%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E + +++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRTPEALFQPSFLGMESCGIHETVYQSIMKCDVDIRKDLYANNVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_BOMMO (Actin, muscle-type A2 OS=Bombyx mori PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.525e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACT2_ARTSX (Actin, clone 211 OS=Artemia sp. PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.525e-16
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E +  ++  C   +   LY + +L+GG+T++P  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 335

HSP 2 Score: 39.6614 bits (91), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 24/37 (64.86%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G     R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTY_LIMPO (Actin-11 OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.525e-16
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GGST+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEAMFQPSFLGMEACGIQETTFNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEICALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
[Close]
BLAST of DY259794 vs. ExPASy Swiss-Prot
Match: ACTA_LIMPO (Actin, acrosomal process isoform OS=Limulus polyphemus PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 1.525e-16
Identity = 31/83 (37.35%), Postives = 48/83 (57.83%), Query Frame = 1 
Query:   10 NVRFLVPEMIFQPADLGMNQAGLAECIVRAVNSCHPYLHSVLYESIILTGGSTLFPRFAERLERELRPLVPDDYQVKITTQEE 258
            N RF  PE +FQP+ LGM   G+ E    ++  C   +   LY + +L+GGST+FP  A+R+++E+  L P   ++KI    E
Sbjct:  253 NERFRCPEAMFQPSFLGMEACGIHETTFNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEIGALAPSTMKIKIIAPPE 335

HSP 2 Score: 40.0466 bits (92), Expect = 1.525e-16
Identity = 18/37 (48.65%), Postives = 25/37 (67.57%), Query Frame = 3 
Query:  357 VWRGGSLLASSPDFQAMCVTKAEYEENGSARCRRRFF 467
            VW GGS+LAS   FQ M ++K EY+E+G +   R+ F
Sbjct:  340 VWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
The following BLAST results are available for this feature:
BLAST of DY259794 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 373
Match NameE-valueIdentityDescription
ACT_SCHDU1.525e-1633.73Actin OS=Scherffelia dubia PE=2 SV=1[more]
ACT6_SOLTU1.525e-1634.57Actin-71 OS=Solanum tuberosum GN=AC71 PE=3 SV=2[more]
ACT2_SUIBO1.525e-1639.76Actin-2 OS=Suillus bovinus GN=ACT2 PE=2 SV=1[more]
ACT1_ONCVO1.525e-1637.35Actin-1 OS=Onchocerca volvulus GN=act-1a PE=3 SV=1[more]
ACT5_BACDO1.525e-1634.94Actin-5, muscle-specific OS=Bactrocera dorsalis PE... [more]
ACT4_DROME1.525e-1634.94Actin, larval muscle OS=Drosophila melanogaster GN... [more]
ACT2_BOMMO1.525e-1634.94Actin, muscle-type A2 OS=Bombyx mori PE=3 SV=1[more]
ACT2_ARTSX1.525e-1634.94Actin, clone 211 OS=Artemia sp. PE=2 SV=1[more]
ACTY_LIMPO1.525e-1637.35Actin-11 OS=Limulus polyphemus PE=2 SV=1[more]
ACTA_LIMPO1.525e-1637.35Actin, acrosomal process isoform OS=Limulus polyph... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259794 ID=DY259794; Name=DY259794; organism=Citrus clementina; type=EST; length=1076bp
GACTTGACAAATGTACGCTTTCTTGTCCCAGAGATGATCTTTCAACCTGC
AGATTTGGGAATGAACCAGGCTGGACTAGCTGAGTGCATTGTTCGAGCTG
TTAATTCTTGCCATCCTTATCTTCATTCTGTACTTTATGAAAGCATTATA
TTAACTGGTGGAAGCACGTTATTCCCTCGATTTGCTGAAAGACTAGAAAG
GGAGCTTCGGCCTCTAGTCCCTGATGACTATCAAGTGAAAATAACAACCC
AAGAAGAGTATTCACATCCTCCTTAAAATACTAATGACTTTTTCTTTAGA
AGTTACTTCTTCCCAATTGGTAAAACATTTTCGTGCTTTCCAGTCCCTTA
TTAGGTGTCTGGCGAGGAGGATCACTTTTGGCTTCCAGTCCTGATTTTCA
AGCAATGTGTGTCACCAAGGCTGAGTATGAGGAGAATGGATCTGCTCGAT
GTCGCAGGCGATTCTTTCATTGACTTCAAATATTTCTAAAGCTTTGTGGC
AATTAAATGGTGCACGAGGACTTAAGCTGCCGTGGATGCACTGTCTTCTG
TTGAACAAAACAAGGTGGATCCAGGTTTTGATGCCTTGTAAATGTTGGGA
AAACATCTGGACTTCTACACACAGCTTGTCCGGGTATTGGAACAGAGAAA
ATATGGCACCTTGGCAGTTTCACCCTCTCAAGGTGATGGGTCGAGGTTTA
ATCCCTTGGCTATAGAAAGTGACTGACATGCTCAAATCCCGGATCATTCA
AACCCAAAGGCAAAACTAAACAAACGGGATCCCCCCCATTATGGAAGGTC
CCCCCTGGTACCGGGTTAAAACCCCTTTTGTTGAAACCCTTCTTTCCCCC
CCCTCCATTTGTTTTTTTACCAGGTGGGCCCCTAAAGGGAGGAAAGGGTG
AAACAGGGGGAAGTCCATTTCTCGGAAAATTTTTTTGTAATTTGGGGCTT
TTTTTCTCACCCTTTTGAATAAAAATGTAAAAACCAAAAGCCCTTGAAAA
AAAATTCTTGCTTCCTTCCCTTTAAACTCCAAAGGGTTGGGGGATATACC
CTTTAAAGGGGGGGAGCAACCTCAAA
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