DY259795

Overview
NameDY259795
Unique NameDY259795
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length953
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259795 vs. ExPASy Swiss-Prot
Match: RPGRH_CAEEL (X-linked retinitis pigmentosa GTPase regulator homolog OS=Caenorhabditis elegans GN=glo-4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 51/180 (28.33%), Postives = 84/180 (46.67%), Query Frame = 3
Query:  294 ISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHG--NSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEEVSIKMVAAGAEHSVAVAEKENSMDGG 827
            I+ GA H + L S   + +WG    GQ G G +    +  Q+   D   I  + CG  H+ A+  S   ++++GWG +G+LGHG  N+S+   P  +  L   +V QIACG +H + +T  G V   G    GQ+G+      +          + ++ +A    HS+ + E     + G
Sbjct:  781 IACGAEHILVLSSSGQLSAWGGNRFGQCGVGHSFRIANLHQVDG-DWPAIEKIACGQFHS-AFICSDGSLWTFGWGVWGQLGHGGRNNSNQLVPTRVNGL-ICKVTQIACGRAHTVVLTDTGRVLVCGSGSYGQMGVDDDIKKVFAFTPLPLGPLRVRDIATHYYHSICITEDNRVFEWG 957          

HSP 2 Score: 70.0922 bits (170), Expect = 2.135e-11
Identity = 35/97 (36.08%), Postives = 60/97 (61.86%), Query Frame = 3
Query:  285 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLG-----HGNSSDL 560
            ++ ++ G SHS  + S   + +WG+G D QLGHG+  +R+ P Q+   +G + V+V+ G +HT A ++    V++WG  DFG+ G     +GNS+D+
Sbjct: 1024 IVSVACGLSHSALITSEGTLYTWGKGLDYQLGHGNKNERMEPHQVFEPNGAKWVNVSLGNNHTIASTDD-GSVFAWGKNDFGQCGVLTKKNGNSADV 1119          
BLAST of DY259795 vs. ExPASy Swiss-Prot
Match: RCCDA_DICDI (RCC1 domain-containing protein DDB_G0279253 OS=Dictyostelium discoideum GN=DDB_G0279253 PE=4 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.523e-12
Identity = 58/205 (28.29%), Postives = 93/205 (45.37%), Query Frame = 3
Query:  285 VLLISAGASHSVALLSGNIVCSWGRGEDGQLGH----------------GDAEDRL---SPTQLSALDGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPI------------KALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLG----LGTTEDSLVPQKL---QAFEEVSIKMVAAGAEH 785
            ++ +S G  HS+AL S N V  WG  + GQL +                 D  D +   SP  ++  +  +I+ ++CG  HT     +   V S+G   FG+LG+GN  D   P  I            K+L+ +++K+I CG S+   +T + ++   GR + G LG    L     +    KL   ++F E  IK  + G+EH
Sbjct:  233 IVSVSCGMRHSIALSSENDVYGWGCNKFGQLSNLIDGNSLKSNNNNNNINDIADPMVQDSPKLINFKNEIKIIQISCGFQHTLLLDINFKNVLSFGQNKFGQLGNGNFIDQSNPCVIDISSFILPTSTSKSLNDIKIKEIQCGWSNSCLLTNQDKLYICGRGEYGILGDNRDLSLDNSNSNQFKLLNSESFNENKIKNFSIGSEH 437          
BLAST of DY259795 vs. ExPASy Swiss-Prot
Match: SRGEF_MOUSE (Secretion-regulating guanine nucleotide exchange factor OS=Mus musculus GN=Sergef PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 5.620e-12
Identity = 52/168 (30.95%), Postives = 80/168 (47.62%), Query Frame = 3
Query:  339 IVCSWGRGEDGQLGHGDAEDRLSPTQLSAL-DGHEIVSVTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGL-GTTEDSLVPQKLQAFEEVSIKMVAAGAEHSVAVAEKENSMDGGGAL 836
            ++ +WG    GQLG G  ED   P QLS       I SVT G  H+   ++    ++  G    G+LG G++ ++      K L    ++Q+ACG    + +T +G+V S G N  GQLG+       +VPQ ++   E  +  VAAG  H++A     +    G  L
Sbjct:   16 VLFAWGANSYGQLGLGHKEDVFLPQQLSDFCQAGCIKSVTGGGGHSAVVTDGG-DLFVCGLNKDGQLGLGHTEEVLRFTICKPLRGCPIRQVACGWDFTIMLTEKGQVLSCGSNAFGQLGVPHGPRKCVVPQAIECLRE-KVVCVAAGLRHALATTATGSVFQWGTGL 181          
BLAST of DY259795 vs. ExPASy Swiss-Prot
Match: SRGEF_BOVIN (Secretion-regulating guanine nucleotide exchange factor OS=Bos taurus GN=SERGEF PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 9.586e-12
Identity = 51/176 (28.98%), Postives = 83/176 (47.16%), Query Frame = 3
Query:  315 SVALLSGNIVCSWGRGEDGQLGHGDAEDRLSPTQLSALDGHEIVS-VTCGADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGL-GTTEDSLVPQKLQAFEEVSIKMVAAGAEHSVAVAEKENSMDGGGAL 836
            S A+ +   + +WG    GQLG G  ED LS  QLS       +  +T G  H+   ++    ++  G    G+LG G++ ++    P K+L    ++Q+ACG    + +T  G+V S G N  GQLG+       ++PQ ++   E  +  +AAG  H++A          G  L
Sbjct:    8 SEAVPTAAALFAWGANSYGQLGLGHKEDVLSAQQLSDFCKSGCIKRITGGGGHSAVVTDEG-SLFVCGLNKDGQLGLGHTEEVLYFTPCKSLLGCAIQQVACGWDFTIILTENGQVLSCGSNSFGQLGVPHGPRRCVIPQAIELLRE-KVVSIAAGLRHALAATASGTVFQWGTGL 181          
BLAST of DY259795 vs. ExPASy Swiss-Prot
Match: RCCD1_MOUSE (RCC1 domain-containing protein 1 OS=Mus musculus GN=Rccd1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.176e-11
Identity = 37/115 (32.17%), Postives = 62/115 (53.91%), Query Frame = 3
Query:  459 GADHTTAYSESCMQVYSWGWGDFGRLGHGNSSDLFTPLPIKALHSLRVKQIACGDSHCLAVTVEGEVQSWGRNQNGQLGLGTTEDSLVPQKLQAFEEVSIKMVAAGAEHSVAVAE 803
            GA+H      +  QV+SWG G  G+LGHG       P  ++AL  LR+ ++A G  H + ++  G++  WG N++GQL L T   +    + +A  E + ++   G +  +AVA+
Sbjct:  169 GAEHVLLLC-AAGQVFSWGAGRHGQLGHGTLEAELEPRLLEALQGLRMAKVAAGGWHSVCLSETGDIYIWGWNESGQLALPTRSGT----ENKAEREEATELNEDGLKEELAVAD 278          

HSP 2 Score: 26.5646 bits (57), Expect = 1.176e-11
Identity = 10/17 (58.82%), Postives = 12/17 (70.59%), Query Frame = 2
Query:  800 RKGKLHGWGRGPYGNLG 850
            R G+L+ WG G YG LG
Sbjct:  318 RTGELYTWGWGKYGQLG 334          
The following BLAST results are available for this feature:
BLAST of DY259795 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
RPGRH_CAEEL2.523e-1228.33X-linked retinitis pigmentosa GTPase regulator hom... [more]
RCCDA_DICDI2.523e-1228.29RCC1 domain-containing protein DDB_G0279253 OS=Dic... [more]
SRGEF_MOUSE5.620e-1230.95Secretion-regulating guanine nucleotide exchange f... [more]
SRGEF_BOVIN9.586e-1228.98Secretion-regulating guanine nucleotide exchange f... [more]
RCCD1_MOUSE1.176e-1132.17RCC1 domain-containing protein 1 OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YD13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259795 ID=DY259795; Name=DY259795; organism=Citrus clementina; type=EST; length=953bp
ACAGTTGTTAAAAAAAACTCTCTGGTGAGAGCCTAGTCTCGTCTTCTTTA
TGTGATGCACATGTGCAGCTATCTCAATCAATTTAAATATCTCTTACCCA
CTTTCTGATCATAATTCATTATCACCTTTCTCTCTTGGAACTGGAAGGAG
AAGCATAAGATCCCACTTCCATCTTTCGTTCGTTCTTTCTTTCTTCATCG
CTTGTAAGAAAAGAAACAATAGCAATGGCAGAGGCCTCTGCTGCGAGCGA
AGCCGCTAGTACCACTGCTGCTCCATTTCGTCCTGTTCTTCTCATCTCTG
CTGGTGCTAGTCACTCTGTTGCTCTACTCTCTGGAAACATTGTGTGCTCC
TGGGGACGAGGGGAGGATGGTCAGTTAGGTCATGGGGATGCTGAGGATCG
ACTTTCTCCTACTCAATTGAGTGCACTTGATGGCCATGAAATAGTATCTG
TTACTTGTGGAGCTGATCATACAACTGCGTACTCTGAGTCATGCATGCAA
GTTTATAGTTGGGGATGGGGTGACTTCGGGAGGTTGGGTCATGGCAATTC
TAGTGACTTGTTCACTCCTCTACCAATTAAAGCATTGCATAGTCTGAGGG
TAAAGCAAATTGCTTGTGGGGACAGCCATTGTTTAGCAGTGACTGTGGAA
GGAGAGGTGCAAAGCTGGGGGCGGAATCAAAATGGTCAACTAGGTCTCGG
CACCACTGAAGATTCCCTTGTGCCTCAAAAACTCCAGGCCTTTGAGGAAG
TATCAATCAAAATGGTTGCTGCTGGTGCTGAACATTCAGTTGCTGTTGCA
GAAAAGGAAAACTCCATGGATGGGGGCGGGGCCCTTATGGAAATTTGGGT
TTAGTGAAAAAAAGATCCCCTAATCCCTGAAAAAGTGCCCACGTCAATTT
CAAAAAAAAAAAATGGTTTGGTGTCTTGGGAATGAAAAACCCTATTCGGT
TCC
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