DY259808

Overview
NameDY259808
Unique NameDY259808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:227..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHESR (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-7) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 86/287 (29.97%), Postives = 133/287 (46.34%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L + L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   VD+IIS GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN ++D+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVLPDV-------------------VVLRHCKIKNAIIDRGCIIPEGTVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHESM (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain MR-4) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 86/287 (29.97%), Postives = 133/287 (46.34%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L + L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   VD+IIS GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN ++D+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFDQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVLPDV-------------------VVLRHCKIKNAIIDRGCIIPEGTVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB8 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS185) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 87/288 (30.21%), Postives = 134/288 (46.53%), Query Frame = 1
Query:    1 LQKHIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP+ P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   +D+I+S GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN +LD+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVLPDV-------------------VVLRHCKIKNAILDRGCIIPEGMVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB2 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS223) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.203e-22
Identity = 87/288 (30.21%), Postives = 134/288 (46.53%), Query Frame = 1
Query:    1 LQKHIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP+ P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   +D+I+S GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN +LD+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPQQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVLPDV-------------------VVLRHCKIKNAILDRGCIIPEGMVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHESA (Glucose-1-phosphate adenylyltransferase OS=Shewanella sp. (strain ANA-3) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 86/287 (29.97%), Postives = 132/287 (45.99%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC+ +  + A+  +G+M++D   +I+ F EKPK P       +  L              ASMG Y+F T+ L   L+     +N   DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   VD+IIS GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN ++D+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDEMRILGFEEKPKHPKHSPGNPEKCL--------------ASMGNYVFNTEFLFEQLKKDAQNANSDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVLPDV-------------------VVLRHCKIKNAIIDRGCIIPEGTVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEFN (Glucose-1-phosphate adenylyltransferase OS=Shewanella frigidimarina (strain NCIMB 400) GN=glgC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 85/287 (29.62%), Postives = 138/287 (48.08%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCV--PMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMMKVANY-YQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ A++TV C+  P+D++ A  +G+M++D   ++I F EKP  P  K +  D T+             +ASMG Y+F T  L   L+   ++     DFG +IIPA +++H V AF F+        YW D+GT+ SFF AN+ L         YD K P +T    LPP K        R   VD+I+S GC +    V+  ++           F +  ++V +Y +  +   LP       +VL+  K +N +LD+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGAEMTVCCLETPIDEA-AGAFGVMEVDSEHRVIGFEEKPAEP--KSIPSDPTMC------------LASMGNYVFNTKFLFEQLKKDANNEKSDRDFGKDIIPAIIENHKVFAFPFSSAVAGQPSYWRDVGTLDSFFQANMELLLPTPPLNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIVSGGCIISGAKVKRCVL-----------FDE--VRVCSYSFVKDSVLLPDV-----VVLKNCKIQNAILDRGCIIPEGMVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_BRAJA (Glucose-1-phosphate adenylyltransferase OS=Bradyrhizobium japonicum GN=glgC PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.877e-22
Identity = 70/225 (31.11%), Postives = 116/225 (51.56%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR--SSYPLSN-DFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            L++H+D+ AD+TV C+ M  + +S +G+M ID +G I +F EKP  P     + D +L              ASMG+Y+F    L + L+  +  P SN DFG +IIP  VK+    A  F+            YW D+GT+ +++ AN+ LT+   + + +D   P ++ +   PP K        R + V +++S GC +   S++ S++  GVR+   + VE
Sbjct:  146 LRQHVDSGADVTVGCLEMPRAESSGFGIMHIDENGWIQEFLEKPADPPPMPGKPDVSL--------------ASMGIYVFDAKFLFDQLKRDAEDPSSNHDFGKDIIPYIVKNGRAIAHQFSTSCVRSGDDPRAYWRDVGTVDAYWAANIDLTDVVPELDLFDRAWPIWSYSEITPPAKFVHDEESRRGQAVSSLVSGGCIISGASLRRSLLFTGVRINSYANVE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEB9 (Glucose-1-phosphate adenylyltransferase OS=Shewanella baltica (strain OS195) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 87/288 (30.21%), Postives = 133/288 (46.18%), Query Frame = 1
Query:    1 LQKHIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC  VP+ ++ A  +G+M++D   +I+ F EKP  P       +  L              ASMG Y+F T+ L + L+    +     DFG +IIPA ++ HNV A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   +D+I+S GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN +LD+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPIAEA-AGSFGVMEVDEEMRILGFEEKPLQPKHSPGNPEMCL--------------ASMGNYVFNTEFLFDQLKKDALNESSDRDFGKDIIPAIIEKHNVFAYPFKSAFPNEQAYWRDVGTLDSFWQANMELLSPTPALNLYDAKWPIWTFQEQLPPAKFVFDDDDRRGMALDSIVSGGCIISGATVRRSVLFNEVRVCSYSLVEDSVVLPDV-------------------VVLRHCKIKNAILDRGCIIPEGMVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHIEC (Glucose-1-phosphate adenylyltransferase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.908e-22
Identity = 68/217 (31.34%), Postives = 104/217 (47.93%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVR 585
            LQ+H+D+ AD+T+ C+ +    A+ +G+M ++   +I  F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +   S+  S++  GVR
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIFAFIEKPADPP-------------GIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPTSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDDDRRGSATSSVVSGDCIISGASLNKSLLFTGVR 348          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHILW (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=glgC PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.409e-22
Identity = 69/217 (31.80%), Postives = 104/217 (47.93%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVR 585
            LQ+H+D+ AD+T+ C+ +    A  +G+M ++   +II F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +   S+  S++  GVR
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEAVGFGVMHVNEKDEIIAFVEKPADPP-------------PIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSATSSVVSGDCIISGASLNNSLLFTGVR 348          
The following BLAST results are available for this feature:
BLAST of DY259808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_SHESR2.203e-2229.97Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESM2.203e-2229.97Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB82.203e-2230.21Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEB22.203e-2230.21Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHESA2.877e-2229.97Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEFN2.877e-2229.62Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_BRAJA2.877e-2231.11Glucose-1-phosphate adenylyltransferase OS=Bradyrh... [more]
GLGC_SHEB94.908e-2230.21Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_RHIEC4.908e-2231.34Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHILW6.409e-2231.80Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259808 ID=DY259808; Name=DY259808; organism=Citrus clementina; type=EST; length=995bp
CTACAGAAGCATATCGACACAAAAGCTGATATTACAGTCTCATGTGTACC
AATGGATGACAGCCGTGCATCAGATTATGGACTAATGAAGATTGACCGCT
CAGGGCAAATCATCCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAA
GGAATGCAATGTGATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGT
CAAATTTCCTTACATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATG
TCCTACTAAATCTCTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGC
TCTGAAATTATTCCAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTT
ATTCAATGACTACTGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATG
CCAATTTGGCCCTCACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCC
AAGACACCTTTCTATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGA
TCGATGCAAGATAGTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAG
AATGTTCGGTGCAACTTTCCATAGTAGGCGTGCGCCTCCCTTTAGAGTCT
GGTGTTGAATTTTCAGATACTATGATGAAGGTTGCAAACTACTATCAAAT
GAATCCGAAATTCCTCCCTACTTGCGGAAGGAAGGTCCCATTGGTGTTGG
AACAAATCAAAAATAAAAATTGCCTCCTTGACAAAAAGCCCAAATTGGAA
AAAGGGGCTCTTGCAAAGTCTAAGGGGTTCCAAAACCAAAAACCAAATGG
AGGATTTTTTTTTCGTCCGGGGACCCCTTCTCCCGAAAAGGGCACTCTCT
TGGCGGGACCTGTTTTCCCCCTCCCCCATCCCTTTCCCCGGGGACACTTC
GTTCTTTAAAAAAAAAAGAAAAATGGGGGTGCGGCTTTTCTCATTTGGGC
CCGAAAACGTGACCTACAAACAATGAGCTAACCAAGGGGGGCACC
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