DY259808

Overview
NameDY259808
Unique NameDY259808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:227..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHOP5 (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisA53) GN=glgC PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKVDRCKI------VDAIISHGCFLRECSV--QLSIVGVRLPLESGVE 609
            LQ+H+   A +TV C+ +    AS +G+M +D + QI+ F EKP  P              +MPD      +ASMG+Y+F T  L   LR   +    S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD   P +T     PP K    K+        +++S GC +   ++   L   GVR+   S +E
Sbjct:  146 LQQHVQQGAHVTVGCLEVPRKEASGFGVMHVDANDQILSFIEKPAHPP-------------AMPDKPDMA-LASMGIYVFETKFLFEELRRDAADKNSSHDFGKDIIPHIVKHGKAVAHRFDRSCIRSHAESASYWRDVGTVDAYWAANIDLTDIVPQLDLYDHNWPIWTYGEITPPAKFVHDKVGRRGLATSSLVSGGCIISGSTLTQTLLFTGVRIHSFSTIE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHIRD (Glucose-1-phosphate adenylyltransferase OS=Rhizobium radiobacter GN=glgC PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 2.436e-21
Identity = 70/242 (28.93%), Postives = 116/242 (47.93%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTM--MKVANYYQMN 654
            LQ+H+D+ AD+T+ C+ +    A+ +G+M ++   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  +R   +    S DFG +IIP  V+     A  F D           YW D+GTI +++ AN+ LT+     + YD   P +T A   PP K        R   V +++S  C +   ++  S++  GVR    S +E +  +  +K+  + Q++
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKDEIIDFIEKPADPP-------------GIPGNEGFA-LASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSAVSSVVSGDCIISGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLS 373          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SACD2 (Glucose-1-phosphate adenylyltransferase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21
Identity = 70/224 (31.25%), Postives = 111/224 (49.55%), Query Frame = 1
Query:   10 HIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            H++T AD+TVSC  VP++++ A  +G+M +D   +II+F EKP+ P     +   TL              ASMG Y+F T+ L + LR         +DFG  IIP  + +  V A+ F D       YW D+GT+ SF++AN+ L         Y+   P +T    LPP K        R   VD+++S GC +    V+ S++   + + S  E  ++++
Sbjct:  151 HVETGADLTVSCIEVPIEEA-AGSFGVMTVDDDNRIIRFDEKPQRPTELANKPGYTL--------------ASMGNYVFNTEFLFDQLRKDAADPDSEHDFGKNIIPNIIAEKLVSAYRFRDHDTNETAYWRDVGTLDSFWEANMELVSPNPSLNLYNHDWPIWTYQTQLPPAKFVFDDDSRRGYAVDSMVSGGCIVSGGKVKSSLLFSDVHIHSYAEIEESVL 359          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_AGRRK (Glucose-1-phosphate adenylyltransferase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21
Identity = 72/241 (29.88%), Postives = 114/241 (47.30%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTM--MKVANYYQM 651
            LQ+H+D+ A++T+ C+ +    A  +G+M +D   QII F EKP  P               +P    F  +ASMG+Y+F T  L+  L+   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R   V ++++  C +   S+  S++  GVR    S +E +  +  +KV  + Q+
Sbjct:  146 LQQHVDSGAEVTIGCLEVPRMEAVGFGVMHVDEKDQIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPPAKFVHDDENRRGSAVSSVVAGDCIISGASLSNSLLFTGVRANSYSKLEGAVVLPSVKVGRHAQL 372          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBPA (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio parahaemolyticus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.181e-21
Identity = 67/227 (29.52%), Postives = 113/227 (49.78%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            L  H + KA +TVS + M    AS +G++++D  G++I F EKP  P              S+P    F  + SMG Y+F   VL + L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L E+ A F  Y+ K P +T    LPP         R +I+D+++ +G ++R   ++ S++G R  + S  + S+ ++
Sbjct:  135 LNFHTEKKASLTVSALRMPLKEASQFGVIEVDAEGRMIGFEEKPANPK-------------SIPGEPDFALV-SMGNYVFEAQVLFSELVEDADNEASSHDFGKDIIPKMFPRGDVFVYDFSTNRISGEKEEVYWRDVGTIDAYWQAHMDLLEKDAPFSLYNRKWPLHTYYPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISECIL 347          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHIME (Glucose-1-phosphate adenylyltransferase OS=Rhizobium meliloti GN=glgC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.155e-21
Identity = 69/225 (30.67%), Postives = 110/225 (48.89%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            LQ+H+D+ AD+TV C+ +    A+ +G+M +D + +II F EKP  P   G+           PD      +ASMG+Y+F T  L+++LR   +    S DFG +IIP  V+     A  F             YW D+GTI +++ AN+ LT    + + YD   P +T +   PP K        R     +++S  C +   ++  S++  GVR+   S +E
Sbjct:  146 LQQHVDSGADVTVGCLEVPRMEATGFGVMHVDNADRIIAFVEKPADP--PGIP--------GNPDMA----LASMGIYVFHTKFLMDMLRRDAADPKSSRDFGKDIIPYIVEHGKAVAHRFTHSCVRSDFEREAYWRDVGTIDAYWQANIDLTHITPELDIYDSTWPIWTFSEIKPPAKFVHDDENRRGSATSSLVSGDCIISGAALNRSLLFTGVRVNSYSRLE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHIL3 (Glucose-1-phosphate adenylyltransferase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.155e-21
Identity = 68/217 (31.34%), Postives = 103/217 (47.47%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVR 585
            LQ+H+D+ AD+T+ C+ +    A  +G+M ++   +II F EKP  P               +PD   F  +ASMG+Y+F T  LL+ LR   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R     +++S  C +    +  S++  GVR
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEAVGFGVMHVNDKDEIIAFVEKPADPP-------------PIPDKPDFA-LASMGIYVFHTKFLLDALRRDAADPNSSRDFGKDIIPYIVKNGKAVAHRFAKSCVRSDFEHEPYWRDVGTIDAYWQANIDLTAIVPELDIYDKSWPIWTYAEITPPAKFVHDDEDRRGSATSSVVSGDCIISGAMLNNSLLFTGVR 348          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHITR (Glucose-1-phosphate adenylyltransferase OS=Rhizobium tropici GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.426e-21
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            LQ+H+D+ AD+T+ C+ +    A  +G+M +D   +II F EKP  P               +P    F  +ASMG+Y+F T  L+  L+   +    S DFG +IIP  VK+    A  F             YW D+GTI +++ AN+ LT    + + YD   P +T A   PP K        R   V ++++  C +   S+  S++  GVR    S +E
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEAVGFGVMHVDDKDRIIDFVEKPADPP-------------GIPGNPDFA-LASMGIYVFHTKFLIECLKRDAADPNSSRDFGKDIIPHIVKNGKAVAHRFTQSCVRSDFEREAYWRDVGTIDAYWQANIDLTAVVPELDIYDKSWPIWTYAEISPPAKFVHDDEDRRGSAVSSVVAGDCIISGASLYNSLLFTGVRANSYSKLE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHILO (Glucose-1-phosphate adenylyltransferase OS=Rhizobium loti GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.426e-21
Identity = 67/225 (29.78%), Postives = 108/225 (48.00%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            L++H+D  AD+TV C+ +    A+ +G+M +D    II F EKP  P               +P    F  +ASMG+Y+F+T  L+  LR   +    S DFG +IIP  V+     A  F             YW D+GT+ ++++AN+ LT+   + + YD   P +T A   PP K        R   V +++S  C +   +++ S++  G R+   S +E
Sbjct:  147 LRQHVDANADVTVGCLEVPRMEATGFGVMHVDAKDNIIAFVEKPADPP-------------GIPGNPDFA-LASMGIYVFKTKFLMEQLRRDAAEPGSSRDFGKDIIPYIVQHGKAIAHRFTKSCVRSTAENEAYWRDVGTVDAYWEANIDLTDITPELDLYDRDWPIWTYAELKPPAKFVHDEDGRRGSAVSSLVSGDCIVSGATLKKSLIFTGARINSYSTLE 357          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_ALTMD (Glucose-1-phosphate adenylyltransferase OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.426e-21
Identity = 69/208 (33.17%), Postives = 107/208 (51.44%), Query Frame = 1
Query:    1 LQKHIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSI 573
            L KH ++ A +TVSC  VP++++ A  +G+M +D + +I  F EKP  P    +  D T              +ASMG Y+F T+ L   LR    +     DFG +IIP+ + DH V A+ F      N YW D+GTI SF++AN+ +     +   YD K P +T    LPP K        R + +++++S GC +   +++ SI
Sbjct:  148 LAKHKESGAKMTVSCMSVPLEEA-AGAFGVMSVDENYRINGFEEKPANPT--PLPNDPTRC------------LASMGNYVFDTEFLFEQLRVDSENMGSQRDFGKDIIPSIIADHPVYAYPFEQSGGDNAYWRDVGTIDSFWEANMEMVAPVPQLNLYDRKWPIWTYQEQLPPAKFVWEDHDRRGEAINSVVSGGCIISGSTLRSSI 340          
The following BLAST results are available for this feature:
BLAST of DY259808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_RHOP52.436e-2130.67Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_RHIRD2.436e-2128.93Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_SACD23.181e-2131.25Glucose-1-phosphate adenylyltransferase OS=Sacchar... [more]
GLGC_AGRRK3.181e-2129.88Glucose-1-phosphate adenylyltransferase OS=Agrobac... [more]
GLGC1_VIBPA3.181e-2129.52Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHIME4.155e-2130.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHIL34.155e-2131.34Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHITR5.426e-2130.67Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_RHILO5.426e-2129.78Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_ALTMD5.426e-2133.17Glucose-1-phosphate adenylyltransferase OS=Alterom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259808 ID=DY259808; Name=DY259808; organism=Citrus clementina; type=EST; length=995bp
CTACAGAAGCATATCGACACAAAAGCTGATATTACAGTCTCATGTGTACC
AATGGATGACAGCCGTGCATCAGATTATGGACTAATGAAGATTGACCGCT
CAGGGCAAATCATCCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAA
GGAATGCAATGTGATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGT
CAAATTTCCTTACATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATG
TCCTACTAAATCTCTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGC
TCTGAAATTATTCCAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTT
ATTCAATGACTACTGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATG
CCAATTTGGCCCTCACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCC
AAGACACCTTTCTATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGA
TCGATGCAAGATAGTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAG
AATGTTCGGTGCAACTTTCCATAGTAGGCGTGCGCCTCCCTTTAGAGTCT
GGTGTTGAATTTTCAGATACTATGATGAAGGTTGCAAACTACTATCAAAT
GAATCCGAAATTCCTCCCTACTTGCGGAAGGAAGGTCCCATTGGTGTTGG
AACAAATCAAAAATAAAAATTGCCTCCTTGACAAAAAGCCCAAATTGGAA
AAAGGGGCTCTTGCAAAGTCTAAGGGGTTCCAAAACCAAAAACCAAATGG
AGGATTTTTTTTTCGTCCGGGGACCCCTTCTCCCGAAAAGGGCACTCTCT
TGGCGGGACCTGTTTTCCCCCTCCCCCATCCCTTTCCCCGGGGACACTTC
GTTCTTTAAAAAAAAAAGAAAAATGGGGGTGCGGCTTTTCTCATTTGGGC
CCGAAAACGTGACCTACAAACAATGAGCTAACCAAGGGGGGCACC
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