DY259808

Overview
NameDY259808
Unique NameDY259808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:227..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_ACIBL (Glucose-1-phosphate adenylyltransferase OS=Acidobacteria bacterium (strain Ellin345) GN=glgC PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.426e-21
Identity = 65/225 (28.89%), Postives = 110/225 (48.89%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKVDRCK------IVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            +++H D+ AD+T++ + +D S    +G++ +D    +  F EKPK  +L+           S  D  K    ASMG+Y+F TDVL+ +L       N   DFG  I+P  V ++ + +F F D       YW D+GT+ +++DANL L      F  YD   P  T  R  PP K    +       +D+++S GC +   +V+  ++   + + S  E   +++
Sbjct:  137 MRQHKDSGADVTLATILIDPSETRHFGVVDVDNQSHVNGFVEKPKSTELR-----------SPYDPSKVS--ASMGIYIFNTDVLIPVLLKDAEDPNSKHDFGHNILPKMVGEYKIYSFNFIDENKKEALYWRDVGTLDAYYDANLDLVSVAPVFNLYDKAWPIRTHQRQYPPAKFVFAEQGRMGTALDSVVSMGCIVSGGTVRNCVLSPDVRVNSFSEVDSSIL 348          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_PECCP (Glucose-1-phosphate adenylyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.255e-21
Identity = 69/226 (30.53%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   10 HIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSY--PLSN-DFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            H++  A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL + +  P SN DFG ++IP  V      A  F           N YW D+GT+++++ ANL L     + + YD   P  ++   LPP K   DR       +++++S GC +    V  S++  R+ + S      T++
Sbjct:  156 HVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNP-------------TPMPDNPDMA-LASMGIYVFNADYLYQLLDADHNTPDSNHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDENQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTVI 367          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_DEIGD (Glucose-1-phosphate adenylyltransferase OS=Deinococcus geothermalis (strain DSM 11300) GN=glgC PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.255e-21
Identity = 59/180 (32.78%), Postives = 95/180 (52.78%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSN---DFGSEIIPASVKD-HNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTK 495
            LQ H+D +AD+T++  PM  +RA  +G+M++D   ++ +F EKP+ P       DT+L               SMG Y+F    L  LL +S        DFG  ++P ++ D ++VQA+ F           N YW D+GT+ ++F+A++ L     +F+ Y+P+ P  TS+ F PP K
Sbjct:  141 LQAHMDARADVTIAAYPMPRTRAHQFGVMQVDDRWRVTEFLEKPQDPPGLPGDPDTSL--------------TSMGNYIFSRRALEELLHTSISGEGEGFDFGHNVLPRALADGYHVQAYDFHRNPIPGQSSPNLYWRDVGTLDAYFEASMDLVSVNPEFDIYNPQWPLRTSSEFSPPAK 306          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_THEAB (Glucose-1-phosphate adenylyltransferase OS=Thermosipho africanus (strain TCF52B) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.209e-20
Identity = 60/184 (32.61%), Postives = 95/184 (51.63%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFNDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-DRCKIVDAIISHGC 540
            L  H    A  TV+C+ +  S AS +G+M  D   +II+F EKPK P                        +AS+G+Y+F+   +  +L     +   S+DFG +IIP  ++   V AF F+ YW+D+GTI S++++NL LT     F  +D     YT ++ +PP  + D  K+ +++IS GC
Sbjct:  137 LDYHKAKSALATVACMEVPLSEASRFGIMVTDLENRIIEFQEKPKQPKST---------------------LASLGIYVFQWSFIREVLIEDAKNDQSSHDFGKDIIPKIIQTERVFAFPFDGYWKDVGTIYSYWESNLELTRPIPPFNIHDENWRIYTHSKEMPPAYIADSTKVKNSLISEGC 299          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHISN (Glucose-1-phosphate adenylyltransferase OS=Rhizobium sp. (strain NGR234) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.209e-20
Identity = 66/225 (29.33%), Postives = 109/225 (48.44%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            LQ+H+D+ AD+T+ C+ +    A+ +G+M +D   +II F EKP  P   G+  +  +             +ASMG+Y+F T  L+++LR   +    S DFG +IIP  V+     A  F             YW D+GTI +++ AN+ LT    + + YD   P +T +   PP K        R     +++S  C +   ++  S++  GVR+   S +E
Sbjct:  146 LQQHVDSGADVTIGCLEVPRMEATGFGVMHVDNEDRIIAFVEKPADP--PGIPGNPEMA------------LASMGIYVFHTKFLMDMLRRDAADPKSSRDFGKDIIPYIVEHGKAVAHRFTHSCVRSDFEREAYWRDVGTIDAYWQANIDLTHITPELDIYDSTWPIWTFSEIKPPAKFVHDDEDRRGSATSSLVSGDCIISGAALNKSLLFTGVRVNSYSRLE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_DEIDV (Glucose-1-phosphate adenylyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.209e-20
Identity = 71/245 (28.98%), Postives = 125/245 (51.02%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYPLSND---FGSEIIPASVKD-HNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIVGVRLP------LESGVEFSDTMMKVANYYQMN 654
            L+KHI+++AD+T++  PM  S+A  +G+M++D   ++ +F EK   PD  G+  +  L             + SMG Y+F    L  LL +S     D   FG  +IP ++ D ++VQA+ F           N YW D+GTI ++++AN+ L     +F+ Y+P  P  TS+ F PP K        + +  +++++ G  +   +V+ S++G  +       +ES V F D  ++V  +  +N
Sbjct:  141 LEKHIESRADVTIAAYPMPRSQAHQFGVMQVDAGWRVTEFLEKV--PDPPGLPENPDLS------------LTSMGNYIFSRRALEELLHTSISGQEDGFDFGHNVIPRALADGYHVQAYDFHRNPIPGQSNPNLYWRDVGTIDAYYEANMDLISINPEFDIYNPSWPLRTSSEFSPPAKFVHESDGRKGQAFNSVMAGGVIISGATVRDSVLGRNIRAHSYALIESCVLFDD--VEVGRHSHLN 369          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEON (Glucose-1-phosphate adenylyltransferase OS=Shewanella oneidensis GN=glgC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.579e-20
Identity = 85/287 (29.62%), Postives = 133/287 (46.34%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASD-YGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFND-------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKKPKLEKGALA-------KSKGFQ 783
            L  H ++ AD+TVSC+ +  + A+  +G+M++D   +I+ F EKP+ P      C         P+      +ASMG Y+F T+ L   L+    +     DFG +IIP+ ++ H V A+ F         YW D+GT+ SF+ AN+ L         YD K P +T    LPP K        R   VD+IIS GC +   +V+ S++   VR+   S VE S  +  V                   +VL   K KN ++D+   + +G +        ++KGF+
Sbjct:  146 LAAHAESGADMTVSCLEVPVAEAAGAFGVMEVDDDMRILGFEEKPQLPK----HCPGN------PEKC----LASMGNYVFNTEFLFEQLKKDAQNAESDRDFGKDIIPSIIEKHKVFAYPFKSAFPNEQAYWRDVGTLDSFWLANMELLSPTPALNLYDAKWPIWTYQEQLPPAKFVFDDDDRRGMAVDSIISGGCIISGATVRRSVLFNEVRVCSYSVVEDSVVLPDV-------------------VVLRHCKIKNAIIDRGCIIPEGTVIGYNHDHDRAKGFR 399          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_SHEAM (Glucose-1-phosphate adenylyltransferase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.579e-20
Identity = 65/210 (30.95%), Postives = 100/210 (47.62%), Query Frame = 1
Query:    1 LQKHIDTKADITVSC--VPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRS---SYPLSNDFGSEIIPASVKDHNVQAFLFN-------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV 576
            L  H  + AD+TV C  VP+ ++ A  +G+M++    +++ F EKP  P       +  L              ASMG Y+F T+ L + LR    +     DFG +IIP+ +++H V A+ F        DYW D+GT+ +F+ AN+ L         YD K P +T    LPP K        R    D+I+S GC +    V+ S++
Sbjct:  148 LAAHAQSGADMTVCCQEVPVAEA-AGSFGVMEVAEDMRVVGFEEKPANPSCLPHDPERCL--------------ASMGNYVFNTEFLFDQLRKDAENVSSERDFGKDIIPSIIREHKVFAYAFKSGLGAGQDYWRDVGTLDTFWQANMELLSPEPHLNLYDAKWPIWTYQEQLPPAKFVFDDEDRRGMATDSIVSGGCIISGAKVKRSVL 342          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHOS4 (Glucose-1-phosphate adenylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 63/212 (29.72%), Postives = 108/212 (50.94%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV 576
            L++H +T AD+T+ C+ +  + A+ +G+M +D + +I  F EKP  P            G+   +A     +ASMG+Y+F    L +LL         S+DFG ++IPA VK+    A  F+D           YW D+GTI +F+ AN+ LT+   K + YD + P +T ++ +PP K        R   + +++S  C +    ++ S++
Sbjct:  146 LRQHCETGADVTIGCLTVPRAEATAFGVMHVDANLRITDFLEKPADPP-----------GIPGDEANA---LASMGIYVFDWAFLRDLLIRDAEDPNSSHDFGHDLIPAIVKNGKAMAHRFSDSCVMTGLETEPYWRDVGTIDAFWQANIDLTDFTPKLDLYDREWPIWTYSQIVPPAKFIHDSENRRGTAISSLVSGDCIVSGSEIRSSLL 343          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHOS1 (Glucose-1-phosphate adenylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=glgC PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 63/212 (29.72%), Postives = 108/212 (50.94%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV 576
            L++H +T AD+T+ C+ +  + A+ +G+M +D + +I  F EKP  P            G+   +A     +ASMG+Y+F    L +LL         S+DFG ++IPA VK+    A  F+D           YW D+GTI +F+ AN+ LT+   K + YD + P +T ++ +PP K        R   + +++S  C +    ++ S++
Sbjct:  146 LRQHCETGADVTIGCLTVPRAEATAFGVMHVDANLRITDFLEKPADPP-----------GIPGDEANA---LASMGIYVFDWAFLRDLLIRDAEDPNSSHDFGHDLIPAIVKNGKAMAHRFSDSCVMTGLETEPYWRDVGTIDAFWQANIDLTDFTPKLDLYDREWPIWTYSQIVPPAKFIHDSENRRGTAISSLVSGDCIVSGSEIRSSLL 343          
The following BLAST results are available for this feature:
BLAST of DY259808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC_ACIBL5.426e-2128.89Glucose-1-phosphate adenylyltransferase OS=Acidoba... [more]
GLGC_PECCP9.255e-2130.53Glucose-1-phosphate adenylyltransferase OS=Pectoba... [more]
GLGC_DEIGD9.255e-2132.78Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_THEAB1.209e-2032.61Glucose-1-phosphate adenylyltransferase OS=Thermos... [more]
GLGC_RHISN1.209e-2029.33Glucose-1-phosphate adenylyltransferase OS=Rhizobi... [more]
GLGC_DEIDV1.209e-2028.98Glucose-1-phosphate adenylyltransferase OS=Deinoco... [more]
GLGC_SHEON1.579e-2029.62Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_SHEAM1.579e-2030.95Glucose-1-phosphate adenylyltransferase OS=Shewane... [more]
GLGC_RHOS42.062e-2029.72Glucose-1-phosphate adenylyltransferase OS=Rhodoba... [more]
GLGC_RHOS12.062e-2029.72Glucose-1-phosphate adenylyltransferase OS=Rhodoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259808 ID=DY259808; Name=DY259808; organism=Citrus clementina; type=EST; length=995bp
CTACAGAAGCATATCGACACAAAAGCTGATATTACAGTCTCATGTGTACC
AATGGATGACAGCCGTGCATCAGATTATGGACTAATGAAGATTGACCGCT
CAGGGCAAATCATCCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAA
GGAATGCAATGTGATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGT
CAAATTTCCTTACATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATG
TCCTACTAAATCTCTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGC
TCTGAAATTATTCCAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTT
ATTCAATGACTACTGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATG
CCAATTTGGCCCTCACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCC
AAGACACCTTTCTATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGA
TCGATGCAAGATAGTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAG
AATGTTCGGTGCAACTTTCCATAGTAGGCGTGCGCCTCCCTTTAGAGTCT
GGTGTTGAATTTTCAGATACTATGATGAAGGTTGCAAACTACTATCAAAT
GAATCCGAAATTCCTCCCTACTTGCGGAAGGAAGGTCCCATTGGTGTTGG
AACAAATCAAAAATAAAAATTGCCTCCTTGACAAAAAGCCCAAATTGGAA
AAAGGGGCTCTTGCAAAGTCTAAGGGGTTCCAAAACCAAAAACCAAATGG
AGGATTTTTTTTTCGTCCGGGGACCCCTTCTCCCGAAAAGGGCACTCTCT
TGGCGGGACCTGTTTTCCCCCTCCCCCATCCCTTTCCCCGGGGACACTTC
GTTCTTTAAAAAAAAAAGAAAAATGGGGGTGCGGCTTTTCTCATTTGGGC
CCGAAAACGTGACCTACAAACAATGAGCTAACCAAGGGGGGCACC
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