DY259808

Overview
NameDY259808
Unique NameDY259808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length995
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15361 contig Ccv1_Contig15361:227..1221. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVY (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus (strain YJ016) GN=glgC1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 65/227 (28.63%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            L  H + +A +TVS + M  + AS +G++++D  G+++ F EKP  P              S+P    F  + SMG Y+F  DVL   L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L +  A F  Y+ K P +T    LPP         R +I+D+++ +G ++R   ++ S++G R  + S  + S++++
Sbjct:  135 LSFHKEKQAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEEKPSAPK-------------SIPGDPDFALV-SMGNYIFEADVLFAELIEDADNENSSHDFGKDIIPKMFPRGDVFVYDFSQNRISGEKAEVYWRDVGTIDAYWQAHMDLLKTDAPFSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESIL 347          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBCH (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio cholerae GN=glgC1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.062e-20
Identity = 65/227 (28.63%), Postives = 117/227 (51.54%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLF----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPP-----TKVDRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            L  H   +A++TVS + M  S+AS +G++++D +G+++ F EKP  P              S+P   ++  + SMG Y+F  + L   LR    +   S+DFG +IIP       V  + F          + YW D+GTI+S++ A++ L ++  +F  Y+   P +T    LPP      K  + KI D++IS G +++  ++  S++G R  + +G   S++++
Sbjct:  135 LDFHRRMEAELTVSALRMPISQASQFGVIEVDENGKMVGFEEKPSNPK-------------SIPGEPEWA-LVSMGNYIFEAETLSKELREDAENNQSSHDFGKDIIPKMFPRGKVYVYDFTTNKIKGEKESTYWRDVGTIESYWSAHMDLLDKDPEFSLYNRSWPLHTYYPPLPPATFVDVKDKKVKITDSLISGGSYIQGSTIYKSVLGFRSNIAAGSFISESVI 347          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHOPS (Glucose-1-phosphate adenylyltransferase OS=Rhodopseudomonas palustris (strain BisB5) GN=glgC PE=3 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 67/217 (30.88%), Postives = 105/217 (48.39%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFN-----------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQ--LSIVGVR 585
            LQ+H++  AD+TV C+ +  S AS +G+M +D    I  F EKP  P     + D +L+              SMG+Y+F T  L+  L    ++   S+DFG +IIP  VK     A  F+            YW D+GT+ +++ AN+ LT+   + + YD + P +T     PP K        R + V +++S GC +   S++  L   GVR
Sbjct:  146 LQQHVEQGADVTVGCLEVARSEASAFGVMDVDAKDVIRSFLEKPADPPAMPGKPDKSLV--------------SMGIYVFDTKFLIEELHRDAANPDSSHDFGKDIIPYIVKHGKAVAHHFDKSCRRSHAEDTSYWRDVGTVDAYWAANIDLTDIVPQLDLYDREWPIWTYGEITPPAKFVHDKDGRRGEAVSSLVSGGCIISGASLRHTLLFTGVR 348          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_GEMAT (Glucose-1-phosphate adenylyltransferase OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 68/225 (30.22%), Postives = 110/225 (48.89%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLRSSYP---LSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVE 609
            LQ+H++  AD+TV  + +    AS +G+M +D + +II F EKP  P               +P A     +ASMG+Y+FRT  L  LLR+       S+DFG +IIP  V+     A  F+            YW D+GTI ++++AN+ LT    + + +D   P +T +    P K        R   +++++S GC +    +  S++  GVR+   S +E
Sbjct:  146 LQQHVNQNADVTVGVLEVPQREASGFGVMHVDANDRIITFLEKPDDPP-------------GIPGAPHLS-LASMGIYVFRTTYLFELLRADAADPHSSHDFGKDIIPTVVRHGKAIAHRFSTSCVRSQDESLAYWRDVGTIDAYWEANIDLTTVTPQLDLFDKDWPIWTYSELTAPAKFVHNEEGRRGHALNSLVSGGCIVSGSYLHKSLLFTGVRVHSYSHLE 356          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_ERWCT (Glucose-1-phosphate adenylyltransferase OS=Erwinia carotovora subsp. atroseptica GN=glgC PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.693e-20
Identity = 66/226 (29.20%), Postives = 110/226 (48.67%), Query Frame = 1
Query:   10 HIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLF-----------NDYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV--DRC----KIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            H++  A+ TV+C+P+    AS +G+M +D+  +I+ FAEKP  P               MPD      +ASMG+Y+F  D L  LL   R++   ++DFG ++IP  V      A  F           + YW D+GT+++++ ANL L     + + YD   P  ++   LPP K   DR       +++++S GC +    V  S++  R+ + S      T++
Sbjct:  156 HVEKGAECTVACLPVPLEEASAFGVMSVDKQHRILDFAEKPDNP-------------TPMPDNPDMA-LASMGIYVFNADYLYQLLETDRNASDSAHDFGQDLIPKIVSQRLAWAHPFTLSCVTSGEDEHQYWRDVGTLEAYWRANLDLASVTPELDVYDRHWPIRSAIESLPPAKFVQDRSGSHGMTMNSLVSGGCIVSGSVVTHSVLFPRVRVNSFCSIDSTVI 367          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_HAES2 (Glucose-1-phosphate adenylyltransferase OS=Haemophilus somnus (strain 2336) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20
Identity = 70/267 (26.22%), Postives = 130/267 (48.69%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKK 738
            L  H+ + A  TV C+ +   +AS++G+M +D + ++  F EKPK P     + DT+L              ASMG+Y+F  D L ++L    ++   S+DFG +I+P S+++  + A  F+            YW D+GT+ SF+ +N+ L  +  + + YD + P   +     P+K      D   + +++IS GC + +  +  S++   V++  +S VE+S  + +V            T G+   L       +NC++D++
Sbjct:  152 LLDHVSSNAKCTVGCIEVPREQASEFGVMAVDENLKVKAFVEKPKDPPAIPNKPDTSL--------------ASMGIYVFDADYLYDVLMREVNTPYTSHDFGKDILPKSLEEEVLYAHPFSRSCMGRNTDGEIYWRDVGTLDSFWQSNIDLVSEHPQLDIYDQRWPIRGNPTQTYPSKFFYNKQDIKPVDNSLISGGCVITDAEISYSVLFDQVKVKADSKVEYSVVLPQV------------TIGKNCIL-------RNCIIDRQ 385          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_HAES1 (Glucose-1-phosphate adenylyltransferase OS=Haemophilus somnus (strain 129Pt) GN=glgC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.517e-20
Identity = 70/267 (26.22%), Postives = 130/267 (48.69%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLLR---SSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQLSIV--GVRLPLESGVEFSDTMMKVANYYQMNPKFLPTCGRKVPLVLEQIKNKNCLLDKK 738
            L  H+ + A  TV C+ +   +AS++G+M +D + ++  F EKPK P     + DT+L              ASMG+Y+F  D L ++L    ++   S+DFG +I+P S+++  + A  F+            YW D+GT+ SF+ +N+ L  +  + + YD + P   +     P+K      D   + +++IS GC + +  +  S++   V++  +S VE+S  + +V            T G+   L       +NC++D++
Sbjct:  152 LLDHVSSNAKCTVGCIEVPREQASEFGVMAVDENLKVKAFVEKPKDPPAIPNKPDTSL--------------ASMGIYVFDADYLYDVLMREVNTPYTSHDFGKDILPKSLEEEVLYAHPFSRSCMGRNTDGEIYWRDVGTLDSFWQSNIDLVSEHPQLDIYDQRWPIRGNPTQTYPSKFFYNKQDIKPVDNSLISGGCVITDAEISYSVLFDQVKVKADSKVEYSVVLPQV------------TIGKNCIL-------RNCIIDRQ 385          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_AZOSB (Glucose-1-phosphate adenylyltransferase OS=Azoarcus sp. (strain BH72) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 61/223 (27.35%), Postives = 111/223 (49.78%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLN-LLRSSYPLSNDFGSEIIPASVKDHNVQAFLFN-------------DYWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKVDRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            +Q H+DT AD TV+ +P+   + S +G+++ D +G+I  F EKP+  +              MP+      +ASMG Y+F TDVL++ L R+     +DFG  ++PA  + H + A+ F+              YW D+GTI +++ A+     +   F   +P+ P Y +       +V    I  A +  G  +R  +++ S++   + +E G E +D+++
Sbjct:  139 VQYHVDTHADATVAAIPIPLEQVSSFGIIRTDSAGRIRDFQEKPQSAE-------------PMPNRPGVA-LASMGNYVFSTDVLVDALTRAHSKGGHDFGKNLLPAMCESHRLMAYDFSSNRVPGIRDFEDASYWRDVGTIDAYYAAHFDTLGECPAFCMSNPRWPIYAAPDQTEAAQVHDGHIRSASLGAGVLVRRATIERSLIRREVVVEEGAEVADSIV 347          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC1_VIBVU (Glucose-1-phosphate adenylyltransferase 1 OS=Vibrio vulnificus GN=glgC1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.593e-20
Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV-----DRCKIVDAIISHGCFLRECSVQLSIVGVRLPLESGVEFSDTMM 627
            L  H +  A +TVS + M  + AS +G++++D  G+++ F EKP  P              S+P    F  + SMG Y+F  DVL   L     +   S+DFG +IIP      +V  + F+           YW D+GTI +++ A++ L +  A F  Y+ K P +T    LPP         R +I+D+++ +G ++R   ++ S++G R  + S  + S++++
Sbjct:  135 LSFHKEKLAALTVSALRMPLAEASQFGVIEVDAEGRMVGFEEKPSAPK-------------SIPGDPDFALV-SMGNYIFEADVLFAELIEDADNENSSHDFGKDIIPKMFPRGDVFVYDFSQNRISGEKAEVYWRDVGTIDAYWQAHMDLLKTDAPFSLYNRKWPLHTYQPPLPPATFTDSDNGRVQIIDSLVCNGSYVRGSRIEKSVLGFRSNIASACDISESIL 347          
BLAST of DY259808 vs. ExPASy Swiss-Prot
Match: GLGC_RHOS5 (Glucose-1-phosphate adenylyltransferase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=glgC PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.999e-20
Identity = 63/212 (29.72%), Postives = 107/212 (50.47%), Query Frame = 1
Query:    1 LQKHIDTKADITVSCVPMDDSRASDYGLMKIDRSGQIIQFAEKPKGPDLKGMQCDTTLLGLSMPDAVKFPYIASMGVYLFRTDVLLNLL---RSSYPLSNDFGSEIIPASVKDHNVQAFLFND-----------YWEDIGTIKSFFDANLALTEQPAKFEFYDPKTPFYTSARFLPPTKV------DRCKIVDAIISHGCFLRECSVQLSIV 576
            L++H +T AD+T+ C+ +    A+ +G+M +D S +I  F EKP  P   G+  D            +   +ASMG+Y+F    L +LL         S+DFG ++IPA V++    A  F+D           YW D+GTI +F+ AN+ LT+   K + YD + P +T ++ +PP K        R   + +++S  C +    ++ S++
Sbjct:  146 LRQHCETGADVTIGCLTVPRMEATAFGVMHVDASLRITDFLEKPADPP--GIPGD------------EGNALASMGIYVFDWAFLRDLLIRDAEDPNSSHDFGHDLIPAIVRNGKAMAHRFSDSCVMTGLETEPYWRDVGTIDAFWQANIDLTDFTPKLDLYDREWPIWTYSQIVPPAKFIHDSERRRGMAISSLVSGDCIVSGSEIRSSLL 343          
The following BLAST results are available for this feature:
BLAST of DY259808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 309
Match NameE-valueIdentityDescription
GLGC1_VIBVY2.062e-2028.63Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC1_VIBCH2.062e-2028.63Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHOPS2.693e-2030.88Glucose-1-phosphate adenylyltransferase OS=Rhodops... [more]
GLGC_GEMAT2.693e-2030.22Glucose-1-phosphate adenylyltransferase OS=Gemmati... [more]
GLGC_ERWCT2.693e-2029.20Glucose-1-phosphate adenylyltransferase OS=Erwinia... [more]
GLGC_HAES23.517e-2026.22Glucose-1-phosphate adenylyltransferase OS=Haemoph... [more]
GLGC_HAES13.517e-2026.22Glucose-1-phosphate adenylyltransferase OS=Haemoph... [more]
GLGC_AZOSB4.593e-2027.35Glucose-1-phosphate adenylyltransferase OS=Azoarcu... [more]
GLGC1_VIBVU4.593e-2028.63Glucose-1-phosphate adenylyltransferase 1 OS=Vibri... [more]
GLGC_RHOS55.999e-2029.72Glucose-1-phosphate adenylyltransferase OS=Rhodoba... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259808 ID=DY259808; Name=DY259808; organism=Citrus clementina; type=EST; length=995bp
CTACAGAAGCATATCGACACAAAAGCTGATATTACAGTCTCATGTGTACC
AATGGATGACAGCCGTGCATCAGATTATGGACTAATGAAGATTGACCGCT
CAGGGCAAATCATCCAATTTGCTGAGAAACCTAAGGGCCCTGATCTGAAA
GGAATGCAATGTGATACTACTCTTCTTGGTCTATCTATGCCAGATGCTGT
CAAATTTCCTTACATTGCATCAATGGGTGTTTACTTGTTTAGAACTGATG
TCCTACTAAATCTCTTGAGATCTAGCTATCCCTTATCCAATGACTTTGGC
TCTGAAATTATTCCAGCTTCTGTGAAGGATCACAATGTCCAAGCCTTTTT
ATTCAATGACTACTGGGAGGACATTGGAACAATAAAGTCCTTTTTTGATG
CCAATTTGGCCCTCACAGAACAGCCTGCGAAGTTTGAATTTTATGATCCC
AAGACACCTTTCTATACGTCTGCTAGATTCTTGCCACCCACTAAAGTTGA
TCGATGCAAGATAGTGGATGCCATAATTTCACACGGTTGCTTCTTGCGAG
AATGTTCGGTGCAACTTTCCATAGTAGGCGTGCGCCTCCCTTTAGAGTCT
GGTGTTGAATTTTCAGATACTATGATGAAGGTTGCAAACTACTATCAAAT
GAATCCGAAATTCCTCCCTACTTGCGGAAGGAAGGTCCCATTGGTGTTGG
AACAAATCAAAAATAAAAATTGCCTCCTTGACAAAAAGCCCAAATTGGAA
AAAGGGGCTCTTGCAAAGTCTAAGGGGTTCCAAAACCAAAAACCAAATGG
AGGATTTTTTTTTCGTCCGGGGACCCCTTCTCCCGAAAAGGGCACTCTCT
TGGCGGGACCTGTTTTCCCCCTCCCCCATCCCTTTCCCCGGGGACACTTC
GTTCTTTAAAAAAAAAAGAAAAATGGGGGTGCGGCTTTTCTCATTTGGGC
CCGAAAACGTGACCTACAAACAATGAGCTAACCAAGGGGGGCACC
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