DY259814

Overview
NameDY259814
Unique NameDY259814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_MYCH7 (Elongation factor Tu OS=Mycoplasma hyopneumoniae (strain 7448) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.264e-14
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  263 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQ 730
            INIGTIGHV HGK+T+  AIS              +  K G A AK Y   D          A    K      +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+   + + +  + +  NK+DL++
Sbjct:   19 INIGTIGHVDHGKTTLTAAIS-------------TVLAKKGLAEAKDYASID----------AAPEEKARGITINTAHIEYSTDK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHILLSKQVGVPKMVVFLNKIDLLE 148          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_MYCH2 (Elongation factor Tu OS=Mycoplasma hyopneumoniae (strain 232) GN=tuf PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.264e-14
Identity = 55/156 (35.26%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  263 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQ 730
            INIGTIGHV HGK+T+  AIS              +  K G A AK Y   D          A    K      +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+   + + +  + +  NK+DL++
Sbjct:   19 INIGTIGHVDHGKTTLTAAIS-------------TVLAKKGLAEAKDYASID----------AAPEEKARGITINTAHIEYSTDK--RHYAHVDCPGHADYIKNMITGAAQMDGAILVVAATDG-PMPQTREHILLSKQVGVPKMVVFLNKIDLLE 148          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU2_THETN (Elongation factor Tu-B OS=Thermoanaerobacter tengcongensis GN=tufB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.487e-14
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  263 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLK 769
            +N+GTIGHV HGK+T+  AI+ + +             K G A AK Y  E D+ P     KA G       +     +E  +    RH + VDCPGH   +  M+ GAA MDGA+L+++A +  P P T EH+     + + +I +  NK D++ +   I   E  ++
Sbjct:   13 VNVGTIGHVDHGKTTLTAAITLILS-------------KAGLAQAKGYD-EIDKAPEE---KARGITINTTHV----EYETAK----RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMVDDPELIELVEMEVR 155          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU1_THETN (Elongation factor Tu-A OS=Thermoanaerobacter tengcongensis GN=tufA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 9.487e-14
Identity = 55/169 (32.54%), Postives = 84/169 (49.70%), Query Frame = 2
Query:  263 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLK 769
            +N+GTIGHV HGK+T+  AI+ + +             K G A AK Y  E D+ P     KA G       +     +E  +    RH + VDCPGH   +  M+ GAA MDGA+L+++A +  P P T EH+     + + +I +  NK D++ +   I   E  ++
Sbjct:   13 VNVGTIGHVDHGKTTLTAAITLILS-------------KAGLAQAKGYD-EIDKAPEE---KARGITINTTHV----EYETAK----RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADG-PMPQTREHILLARQVGVPYIVVFLNKADMVDDPELIELVEMEVR 155          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_GRAFK (Elongation factor Tu OS=Gramella forsetii (strain KT0803) GN=tuf PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.239e-13
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  263 INIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLK 769
            +NIGTIGHV HGK+T+  AI+ V                 GY+ A  +  + D  P           KE     +    E    K  RH + VDCPGH   +  M+ GAA MDGA+L++AA +  P P T EH+     + +  I +  NKVDL+ +   +   E  ++
Sbjct:   13 LNIGTIGHVDHGKTTLTAAITKVMA-------------DAGYSEASAFD-QIDNAPEE---------KERGITINSSHVEYSTEK--RHYAHVDCPGHADYVKNMVTGAAQMDGAILVVAATDG-PMPQTREHILLGRQVGIPRIVVFLNKVDLVDDEELLELVEMEVR 155          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRW (Elongation factor Tu OS=Ehrlichia ruminantium (strain Welgevonden) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  242 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            V  R+  IN+GTIGHV HGK+T+  A++ V   R   E  +++         +I K  +++        A+   + +N                RH + VDCPGH   +  M+ GAA MD A+L+++A +    P T EH+   + + ++ I +  NK D++ +   ++  E  +   RELL
Sbjct:    2 VDGRKPHINVGTIGHVDHGKTTLTAALTTVLAKRLSGEGNKSVKYD------EIDKAPEEKARGITISTAHVEYETEN----------------RHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGA-MPQTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEI---RELL 157          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_EHRRG (Elongation factor Tu OS=Ehrlichia ruminantium (strain Gardel) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  242 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            V  R+  IN+GTIGHV HGK+T+  A++ V   R   E  +++         +I K  +++        A+   + +N                RH + VDCPGH   +  M+ GAA MD A+L+++A +    P T EH+   + + ++ I +  NK D++ +   ++  E  +   RELL
Sbjct:    2 VDGRKPHINVGTIGHVDHGKTTLTAALTTVLAKRLSGEGNKSVKYD------EIDKAPEEKARGITISTAHVEYETEN----------------RHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGA-MPQTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEI---RELL 157          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCR (Elongation factor Tu OS=Ehrlichia chaffeensis (strain Arkansas) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  242 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            V  R+  IN+GTIGHV HGK+T+  A++ V   R   E  +++         +I K  +++        A+   + +N                RH + VDCPGH   +  M+ GAA MD A+L+++A +    P T EH+   + + ++ I +  NK D++ +   ++  E  +   RELL
Sbjct:    2 VEERKPHINVGTIGHVDHGKTTLTAALTTVLAKRLSGEGNKSVKYD------EIDKAPEEKARGITISTAHVEYETEN----------------RHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGA-MPQTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEI---RELL 157          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_EHRCJ (Elongation factor Tu OS=Ehrlichia canis (strain Jake) GN=tuf1 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  242 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            V  R+  IN+GTIGHV HGK+T+  A++ V   R   E  +++         +I K  +++        A+   + +N                RH + VDCPGH   +  M+ GAA MD A+L+++A +    P T EH+   + + ++ I +  NK D++ +   ++  E  +   RELL
Sbjct:    2 VEERKPHINVGTIGHVDHGKTTLTAALTTVLAKRLSGEGNKSVKYD------EIDKAPEEKARGITISTAHVEYETEN----------------RHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGA-MPQTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEI---RELL 157          
BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTUL_EHRRW (Putative elongation factor Tu-like protein OS=Ehrlichia ruminantium (strain Welgevonden) GN=ERWE_CDS_01630 PE=5 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.605e-13
Identity = 52/182 (28.57%), Postives = 88/182 (48.35%), Query Frame = 2
Query:  242 VISRQATINIGTIGHVAHGKSTVVKAISGVQTVRFKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            V  R+  IN+GTIGHV HGK+T+  A++ V   R   E  +++         +I K  +++        A+   + +N                RH + VDCPGH   +  M+ GAA MD A+L+++A +    P T EH+   + + ++ I +  NK D++ +   ++  E  +   RELL
Sbjct:    2 VDGRKPHINVGTIGHVDHGKTTLTAALTTVLAKRLSGEGNKSVKYD------EIDKAPEEKARGITISTAHVEYETEN----------------RHYAHVDCPGHADYIKNMITGAAQMDAAILVVSATDGA-MPQTREHILLAKQVGVKDIVVWMNKCDVVDDEEMLSLVEMEI---RELL 157          
The following BLAST results are available for this feature:
BLAST of DY259814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
EFTU_MYCH77.264e-1435.26Elongation factor Tu OS=Mycoplasma hyopneumoniae (... [more]
EFTU_MYCH27.264e-1435.26Elongation factor Tu OS=Mycoplasma hyopneumoniae (... [more]
EFTU2_THETN9.487e-1432.54Elongation factor Tu-B OS=Thermoanaerobacter tengc... [more]
EFTU1_THETN9.487e-1432.54Elongation factor Tu-A OS=Thermoanaerobacter tengc... [more]
EFTU_GRAFK1.239e-1332.54Elongation factor Tu OS=Gramella forsetii (strain ... [more]
EFTU_EHRRW3.605e-1328.57Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]
EFTU_EHRRG3.605e-1328.57Elongation factor Tu OS=Ehrlichia ruminantium (str... [more]
EFTU_EHRCR3.605e-1328.57Elongation factor Tu OS=Ehrlichia chaffeensis (str... [more]
EFTU_EHRCJ3.605e-1328.57Elongation factor Tu OS=Ehrlichia canis (strain Ja... [more]
EFTUL_EHRRW3.605e-1328.57Putative elongation factor Tu-like protein OS=Ehrl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YE12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259814 ID=DY259814; Name=DY259814; organism=Citrus clementina; type=EST; length=1084bp
CACACCCTCTCACCATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTC
TCGCAGTCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACG
GGCTTGAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTT
CAAAGAAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGA
GTAAGTTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCT
CGCCAGGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAA
ATCAACTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGA
ATGAATTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAG
ATATACAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGC
ATATGGAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTG
AGAACTGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCG
GGTCATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGA
TGGAGCATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCAACAA
CATCGGAGCACTTGGCAGCTGTTGAAATCATGCGTCTCCAACATATAAAA
ATTCTTCAAAATAAAGTTGATCTCATTCAAGAAAATGTGGCCATCAACCA
AAATGAAGCTAATCTGAAGTTTACCAGGGAACTGTTGCTGATGGCGCACC
AGTGGTTCCCATTTCTGGCCACCTAAATAAAATATTGATGTTGGATGCAA
ATATATTGTGAAAAAAAATCCCATTCCAAAAAAGGACTTTTATTGACCAC
CAAAAATGTTTGAAATTCGACTTTTGAAGTCAAAAACCCTGGGTTTGGAA
GTTGATGAATAAAAAGGGGGTGTTGGGGGGGGGCAACCTCTCGGAAGGGG
GGTTCCAAAGGGGAAAACAATTTTTTAGAGGGGGTCCTCCTCGGATTTGG
ATGGTTAAAAAAAGATCCAGGAAAAAATAAAATG
back to top