DY259814

Overview
NameDY259814
Unique NameDY259814
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY259814 vs. ExPASy Swiss-Prot
Match: EFTU_AYWBP (Elongation factor Tu OS=Aster yellows witches'-broom phytoplasma (strain AYWB) GN=tuf PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 9.817e-11
Identity = 55/194 (28.35%), Postives = 79/194 (40.72%), Query Frame = 2 
Query:  245 ISRQATINIGTIGHVAHGKSTVVKAISGVQTVR-------------FKNELERNITIKLGYANAKIYKCEDDRCPRPMCYKAYGSGKEDNPLCDVPGFENCRMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAANESCPQPTTSEHLAAVEIMRLQHIKILQNKVDLIQENVAINQNEANLKFTRELL 787
            I  +  +N+GTIGHV HGK+T+  AI+ V + R                E ER ITIK  +   +  K                                      RH + VDCPGH   +  M+ GAA MD A+L+++  +S   P T EH+     + +  I +  NK DL  +   +   E  +   RELL
Sbjct:    7 IRNKTHLNVGTIGHVDHGKTTLTAAITQVLSARGLAKSRAYDQIDNAPEERERGITIKTSHVEYETEK--------------------------------------RHYAHVDCPGHADYVKNMITGAAQMDAAILVVSGADSV-MPQTREHILLARQVGVPKIVVFLNKCDLSPDEQILELVEMEV---RELL 158
The following BLAST results are available for this feature:
BLAST of DY259814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
EFTU_AYWBP9.817e-1128.35Elongation factor Tu OS=Aster yellows witches'-bro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259814 ID=DY259814; Name=DY259814; organism=Citrus clementina; type=EST; length=1084bp
CACACCCTCTCACCATCAATATAGCGGTAAACCTCAGTCAAATCTCGGTC
TCGCAGTCGTTCTCCGGTCGCAACTTGCTCTGCATTCAATCAGTTTTACG
GGCTTGAACATTACTAGTGGCAATACAGACAATAAGGAGAGGGGTATTTT
CAAAGAAACAGGCAAGATGTCACGGAAGGGTTTGATGGAACAGGACTTGA
GTAAGTTGGATGTAACTAAGTTGCATCCTCTTTCTCCTGAAGTCATTTCT
CGCCAGGCTACTATTAATATTGGAACTATCGGTCATGTGGCCCATGGCAA
ATCAACTGTTGTGAAGGCAATATCTGGTGTTCAGACTGTTCGTTTTAAGA
ATGAATTAGAGCGTAACATTACTATCAAGCTTGGATATGCAAATGCCAAG
ATATACAAATGTGAAGATGATCGTTGCCCACGACCAATGTGCTATAAGGC
ATATGGAAGTGGGAAAGAAGATAATCCTCTGTGCGATGTGCCTGGTTTTG
AGAACTGCAGGATGAAATTGCTTAGGCATGTCTCTTTTGTTGATTGCCCG
GGTCATGATATTCTTATGGCTACAATGCTTAATGGAGCAGCAATTATGGA
TGGAGCATTGCTTCTCATAGCAGCCAATGAAAGTTGCCCGCAACCAACAA
CATCGGAGCACTTGGCAGCTGTTGAAATCATGCGTCTCCAACATATAAAA
ATTCTTCAAAATAAAGTTGATCTCATTCAAGAAAATGTGGCCATCAACCA
AAATGAAGCTAATCTGAAGTTTACCAGGGAACTGTTGCTGATGGCGCACC
AGTGGTTCCCATTTCTGGCCACCTAAATAAAATATTGATGTTGGATGCAA
ATATATTGTGAAAAAAAATCCCATTCCAAAAAAGGACTTTTATTGACCAC
CAAAAATGTTTGAAATTCGACTTTTGAAGTCAAAAACCCTGGGTTTGGAA
GTTGATGAATAAAAAGGGGGTGTTGGGGGGGGGCAACCTCTCGGAAGGGG
GGTTCCAAAGGGGAAAACAATTTTTTAGAGGGGGTCCTCCTCGGATTTGG
ATGGTTAAAAAAAGATCCAGGAAAAAATAAAATG
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