DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8A_PONAB (Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8A PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.813e-22
Identity = 55/134 (41.04%), Postives = 81/134 (60.45%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTI 404
            QI  TAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W++ + +H  +++  M++GNK D+   R VS E  +  A      FMETSA  ++NVENAF  +   I   + +K    G+ P    +G  I
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKRDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKL--EGNSPQGSNQGVKI 191          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.368e-22
Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDS-NIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINI 410
            QI  TAGQER+R+IT AYYR +VG LL++D+T   +F+NV  WL+E + H     IV +LVG+K DL   R V+  +A+  A      ++ETSA +++NVE AFT++   IY +V R  + + +    +  G   N+
Sbjct:   61 QIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFVPNV 197          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8_DISOM (Ras-related protein Rab-8 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.368e-22
Identity = 52/133 (39.10%), Postives = 82/133 (61.65%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAF----TEVLTQIYRVVSRKALDVGDDPAALP 389
            QI  TAGQER+R IT+AYYRGA+G + VYD+T   +F+N++ W++ + +H  S++  M++GNK D+   R VS E  +  A      F+ETSA  S+NVE AF     +++T++ + ++  +L    D    P
Sbjct:   60 QIWDTAGQERFRTITTAYYRGAMGIMKVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNEKRQVSKERGEKLAIDYGIKFLETSAKSSINVEEAFITLARDIMTKLNKKMNENSLQEAVDKLKSP 192          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB37_MOUSE (Ras-related protein Rab-37 OS=Mus musculus GN=Rab37 PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 2.368e-22
Identity = 59/153 (38.56%), Postives = 89/153 (58.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKK-TGCCS 458
            QI  TAGQER+R++T AYYR A   LL+YD+T   +F+N+  WL E+ ++   ++VIML+GNKAD+   R + +ED ++ A +    FMETSA   +NVE AF  +  ++     R+     D+P         +   +D V + KK + CCS
Sbjct:   82 QIWDTAGQERFRSVTHAYYRDAQALLLLYDITNQSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADVSSERVIRSEDGETLAREYGVPFMETSAKTGMNVELAFLAIAKELKYRAGRQP----DEP---------SFQIRDYVESQKKRSSCCS 221          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB1A_LYMST (Ras-related protein Rab-1A OS=Lymnaea stagnalis GN=RAB1A PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 2.368e-22
Identity = 62/151 (41.06%), Postives = 88/151 (58.28%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +   N+  +LVGNK+DL   + V    A+ +A++    F+ETSA  + NVE AF  +  +I          +G   AA     ++ I +   VSA  K GCC
Sbjct:   63 QIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDFTTAKEYADQLGIPFLETSAKNATNVEQAFMTMAAEIKN-------RMGPITAASDSKPSVKINSSTPVSA-NKGGCC 205          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB22A_HUMAN (Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 3.092e-22
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQI 332
            TAGQER+RA+   YYRG+  A++VYD+T+  TF  ++ W+KELR H   NIV+ + GNK DL  +R V   DA+ +A+  +  F+ETSA  ++N+   F E+  +I
Sbjct:   61 TAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLIDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.039e-22
Identity = 55/111 (49.55%), Postives = 76/111 (68.47%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTF-FMETSALESLNVENAFTEVLTQI 332
            QI  TAGQER+R IT +YYR A GA+L YD+++  TF +V  W++++R +  SNIV +L+GNK+DL   R V   +AQS AE  +    +ETSA +S NVE AFT V T++
Sbjct:   68 QIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB26_DROME (Ras-related protein Rab-26 OS=Drosophila melanogaster GN=Rab26 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 4.039e-22
Identity = 57/125 (45.60%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLR-HLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD 374
            QI  TAGQER+R++T AYYR A   LL+YDVT   T++N+  WL E+R++   ++VI+L+GNKAD     R V  ED +    + N  FMETSA   LNVE +FT V  Q+      +  + GDD
Sbjct:  243 QIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGERLGREHNVPFMETSAKTGLNVELSFTAVARQL----KSRGYEHGDD 363          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.275e-22
Identity = 58/148 (39.19%), Postives = 77/148 (52.03%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            TAGQERY  +   YYRGA  A++VYD+    +FE   +W+KEL+     NIVI L GNK DL   R V T +AQ +AE+    FMETSA  S NV   F E+  ++ +            P   P    + I   D+ +  KK  CC+
Sbjct:   65 TAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPKT-----------PTTRPGSGRVAIAPIDNGNTGKKNKCCN 201          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB37_HUMAN (Ras-related protein Rab-37 OS=Homo sapiens GN=RAB37 PE=1 SV=3)

HSP 1 Score: 105.531 bits (262), Expect = 5.275e-22
Identity = 58/153 (37.91%), Postives = 89/153 (58.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKK-TGCCS 458
            QI  TAGQER+R++T AYYR A   LL+YD+T   +F+N+  WL E+ ++   ++VIML+GNKAD+   R + +ED ++ A +    F+ETSA   +NVE AF  +  ++      +A    D+P         +   +D V + KK + CCS
Sbjct:   82 QIWDTAGQERFRSVTHAYYRDAQALLLLYDITNKSSFDNIRAWLTEIHEYAQRDVVIMLLGNKADMSSERVIRSEDGETLAREYGVPFLETSAKTGMNVELAFLAIAKELKYRAGHQA----DEP---------SFQIRDYVESQKKRSSCCS 221          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB8A_PONAB1.813e-2241.04Ras-related protein Rab-8A OS=Pongo abelii GN=RAB8... [more]
RB39B_BOVIN2.368e-2240.88Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
RAB8_DISOM2.368e-2239.10Ras-related protein Rab-8 OS=Discopyge ommata PE=2... [more]
RAB37_MOUSE2.368e-2238.56Ras-related protein Rab-37 OS=Mus musculus GN=Rab3... [more]
RAB1A_LYMST2.368e-2241.06Ras-related protein Rab-1A OS=Lymnaea stagnalis GN... [more]
RB22A_HUMAN3.092e-2244.34Ras-related protein Rab-22A OS=Homo sapiens GN=RAB... [more]
RAB43_MOUSE4.039e-2249.55Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB26_DROME4.039e-2245.60Ras-related protein Rab-26 OS=Drosophila melanogas... [more]
RAB5A_DICDI5.275e-2239.19Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB37_HUMAN5.275e-2237.91Ras-related protein Rab-37 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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