DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.889e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +   +I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 179          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.889e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +   +I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 179          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.889e-22
Identity = 56/120 (46.67%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIVI+L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +   +I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELD 179          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 55/148 (37.16%), Postives = 82/148 (55.41%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            TAGQERY ++   YYRGA  A++VYD+T   +F   ++W++EL+   + N+V+ L GNKADL   R V+ E+A+ +AE+   FFMETSA  ++NV   F E+  ++ R            PA  P G  +           + T CC+
Sbjct:   66 TAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRA----------QPAQNPAGMVL---VDRAAEGTRATSCCT 200          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 59/151 (39.07%), Postives = 85/151 (56.29%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQER+R IT+AYYRGA+G LLVYDVT   +F ++  W++ +  H   ++  ML+GNK D+   + V +   +S A++    F+ETSA  S+NVE AF  +   I     ++ +D  +DP       TI I   +     KK  CC
Sbjct:   67 QIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDI----KKRMIDTPNDP-----DHTICITPNN-----KKNTCC 203          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 57/148 (38.51%), Postives = 85/148 (57.43%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            TAGQERY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   RAV  ++AQ++A+  +  FMETSA  ++NV         +I+  +++K        AA   G+T  +  ++  +   ++ CCS
Sbjct:   77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNV--------NEIFMAIAKKLPKNEPQNAAGAPGRTRGVDLQES-NPASRSQCCS 215          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 58/149 (38.93%), Postives = 83/149 (55.70%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTIN-IGTKDDVSAVKKTGCCS 458
            TAGQERY ++   YYRGA  A++VYD+T   TF   + W+KEL+     NIVI L GNKADL   RAV  +DAQ++A+  +  FMETSA  ++NV   F  +  ++ +          ++P   P G   N +    + S   ++ CCS
Sbjct:   77 TAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK----------NEPQNAPGGPGRNRVVDLQESSQPSRSQCCS 215          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +    I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +    I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.998e-22
Identity = 55/120 (45.83%), Postives = 73/120 (60.83%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALD 362
            QI  TAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R     NIV++L GNK DL   R V+  +A  FA++    F+ETSAL   NVE AF +    I   +    LD
Sbjct:   60 QIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGELD 179          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB4A_HUMAN6.889e-2246.67Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]
RAB4A_DANRE6.889e-2246.67Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB4A_BOVIN6.889e-2246.67Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RHN1_NICPL8.998e-2237.16Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB8B_DICDI8.998e-2239.07Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB5C_MOUSE8.998e-2238.51Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_CHICK8.998e-2238.93Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB4B_RAT8.998e-2245.83Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE8.998e-2245.83Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN8.998e-2245.83Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
back to top