DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.800e-46
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.800e-46
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 1.800e-46
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11B_MOUSE (Ras-related protein Rab-11B OS=Mus musculus GN=Rab11b PE=1 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 2.351e-46
Identity = 96/155 (61.94%), Postives = 116/155 (74.84%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKAL--DVGDDPAALPKGQTINIGTKDDVSAVKKTGCCSA 461
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK N  F+ETSAL+S NVE AF  +LT+IYR+VS+K +      D +       I++    D     K  CC +
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADRAAHDESPGNNVVDISVPPTTDGQRPNKLQCCQS 217          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 2.351e-46
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+S NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKMQCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 185.267 bits (469), Expect = 5.238e-46
Identity = 98/157 (62.42%), Postives = 118/157 (75.16%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA---ALP-KGQTINIGTKDDVSAVKKTGCCSA 461
            QI  TAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV RWL+ELRDH DSNIVIM+ GNK+DL HLR+V+ ED QS AEKE   F+ETSALE+ NVE AF  +L +IY ++S+KAL   +  A   A+P +G TIN+   DD S   K  CCS+
Sbjct:   64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANSAIPGQGTTINV---DDTSGGAKRACCSS 217          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.935e-46
Identity = 95/155 (61.29%), Postives = 115/155 (74.19%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALP---KGQTINIGTKDDVSAVKKTGCCS 458
            QI  TAGQERYRAITSAYYRGAVGALLVYD+T+  TF+NV+RWL+ELRDH DSNIVIM+ GNK+DL HLRAVS +D  + +EKE   F+ETSALE+ N+E AF  +LT+IY +VS+KAL   +  A      +G TIN+    D S   K GCCS
Sbjct:   64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVA---DTSGNTKKGCCS 215          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 8.935e-46
Identity = 98/155 (63.23%), Postives = 119/155 (76.77%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPA--ALP-KGQTINIGTKDDVSAVKKTGCCS 458
            QI  TAGQERYRAITSAYYRGAVGALL YD+T+  TF+NV+RWL+ELRDH DSNIVI+L GNK+DL+HLRAVS +D Q+  +KE   F+ETSALE+LNV+ AF  +LT IY ++S+KAL   +  A  ALP +G TIN+    D SA  K GCCS
Sbjct:   64 QIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTALPGQGTTINV---SDNSANVKRGCCS 215          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11A_BOVIN (Ras-related protein Rab-11A OS=Bos taurus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 8.935e-46
Identity = 93/151 (61.59%), Postives = 111/151 (73.51%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAGQERYRAITSAYYRGAVGALLVYD+ +H+T+ENVERWLKELRDH DSNIVIMLVGNK+DLRHLRAV T++A++FAEK    F+ETSAL+  NVE AF  +LT+IYR+VS+K +    +    P    + I          K  CC
Sbjct:   63 QIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDYTNVEAAFQTILTEIYRIVSQKQMSDRRENDMSPSNNVVPIHVPPTTENKPKVQCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RGP2_ORYSJ (Ras-related protein RGP2 OS=Oryza sativa subsp. japonica GN=RGP2 PE=2 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 4.434e-45
Identity = 95/157 (60.51%), Postives = 122/157 (77.71%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAA---LP-KGQTINIGTKDDVSAVKKTGCCSA 461
            QI  TAGQERYRAITSAYYRGAVGALLVYD+T+  +F+NV RWL+ELRDH DS+IVIM+VGNK+DL HLRAVS ++ ++ AEKE  FF+ETSA+E++NVE AF  ++T++Y +V+RKAL   +  AA   LP +G+TI+I   D  +   K  CCSA
Sbjct:   64 QIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQSFDNVHRWLRELRDHADSSIVIMMVGNKSDLIHLRAVSEDEGKALAEKEGLFFLETSAMEAVNVEEAFQTIITEVYGIVNRKALAAKEAAAASAPLPSQGKTISI---DSAAGNTKRACCSA 217          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RB11A_MOUSE1.800e-4662.25Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN1.800e-4662.25Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CANFA1.800e-4662.25Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11B_MOUSE2.351e-4661.94Ras-related protein Rab-11B OS=Mus musculus GN=Rab... [more]
RB11A_CHICK2.351e-4662.25Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RAA2C_ARATH5.238e-4662.42Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA8.935e-4661.29Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
RB11A_TOBAC8.935e-4663.23Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11A_BOVIN8.935e-4661.59Ras-related protein Rab-11A OS=Bos taurus GN=RAB11... [more]
RGP2_ORYSJ4.434e-4560.51Ras-related protein RGP2 OS=Oryza sativa subsp. ja... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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