DY259818

Overview
NameDY259818
Unique NameDY259818
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB25_RABIT (Ras-related protein Rab-25 OS=Oryctolagus cuniculus GN=RAB25 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.522e-34
Identity = 80/154 (51.95%), Postives = 102/154 (66.23%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTK---DDVSAVKKTGCC 455
            QI  TAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++  +        P+   I +G+     +    +K  CC
Sbjct:   64 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQIQN-------SPRSNAIALGSAQAGQEPGPGQKRACC 210          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB25_HUMAN (Ras-related protein Rab-25 OS=Homo sapiens GN=RAB25 PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 6.007e-34
Identity = 74/117 (63.25%), Postives = 90/117 (76.92%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRK 353
            QI  TAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A+ FAE     F+ETSAL+S NVE AF  VL +I+  VS++
Sbjct:   64 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSKQ 180          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB25_MOUSE (Ras-related protein Rab-25 OS=Mus musculus GN=Rab25 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 1.025e-33
Identity = 81/151 (53.64%), Postives = 100/151 (66.23%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCC 455
            QI  TAG ERYRAITSAYYRGAVGALLV+D+T+H T+  VERWLKEL DH ++ IV+MLVGNK+DL   R V TE+A  FAE     F+ETSAL+S NVE AF  VL +I+  VS++  +     +A+  G   N     D    +K  CC
Sbjct:   64 QIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEACMFAENNGLLFLETSALDSTNVELAFQTVLKEIFAKVSKQKQN-STRTSAITLG---NAQAGQDPGPGEKRACC 210          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RB11C_DICDI (Ras-related protein Rab-11C OS=Dictyostelium discoideum GN=rab11C PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.932e-32
Identity = 76/161 (47.20%), Postives = 99/161 (61.49%), Query Frame = 3
Query:   15 TAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD--------------PAALPKGQTINIGTKDDVSAVKKTGCC 455
            TAGQER+RA+TS YYRGAVGA++VYD+T  ++F+NV RWL ELR+  + +I+IM+VGNK+DL   R V T++AQ+FAE     F+ETSAL S NV  +F  +LT IY +VS K   V DD              P + P  Q             KK+GCC
Sbjct:   66 TAGQERFRAVTSGYYRGAVGAMIVYDITSKISFKNVTRWLNELREMAEQDILIMMVGNKSDLEMSREVPTKEAQAFAESNKISFLETSALNSTNVNQSFERLLTDIYHLVSSKKPMVVDDTQNWLVPNQGKKLTPLSDPAPQL--TANTTSTHQEKKSGCC 224          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.385e-30
Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKKTGCCS 458
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF +    IY+ +     DV ++   +  G  +   +    S+ +  GCCS
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYVVPGQSGGAGSSSQGGGCCS 209          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: YPTC4_CHLRE (GTP-binding protein YPTC4 OS=Chlamydomonas reinhardtii GN=YPTC4 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.809e-30
Identity = 69/159 (43.40%), Postives = 96/159 (60.38%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKG--------QTINIGTKDDVSAVKKTGCC 455
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF     +IY+ +     DV ++   +  G        QT+  G   +  A K + CC
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGGGNAGPQTVKPG---EGGAAKSSSCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2B_HUMAN (Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.809e-30
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTINIGTKDDVSAVKK--------TGCC 455
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H+ SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IYR + +   DV ++   +  G   +I T    SA ++        +GCC
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQGLFDVHNEANGIKIGPQQSISTSVGPSASQRNSRDIGSNSGCC 216          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: YPTV4_VOLCA (GTP-binding protein yptV4 OS=Volvox carteri GN=YPTV4 PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.172e-29
Identity = 68/156 (43.59%), Postives = 95/156 (60.90%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTI-NIGTK----DDVSAVKKTGCC 455
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H + N+ IML+GNK DL H RAV+TE+ + FA++    F+ETSA  + NVE AF     +IY+ +     DV ++   +  G    N G +     +  A K + CC
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANPNMTIMLIGNKCDLTHRRAVTTEEGEQFAKEHGLIFLETSARTAHNVEEAFINTAKEIYKKIQDGVFDVSNESYGIKVGYGAGNAGPQAAKPGEGDARKSSSCC 213          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.172e-29
Identity = 65/144 (45.14%), Postives = 92/144 (63.89%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDD-------PAALPKGQTINIG 413
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H++SN+VIML+GNK+DL   R V  E+ ++FA +    FMETSA  + NVE AF     +IY+ +     D+ ++       P   P  Q++N+G
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIYQKIQDGVFDINNEANGIKIGPQHSPASQSLNVG 201          
BLAST of DY259818 vs. ExPASy Swiss-Prot
Match: RAB2B_MAIZE (Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.172e-29
Identity = 69/153 (45.10%), Postives = 93/153 (60.78%), Query Frame = 3
Query:    3 QISFTAGQERYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDSNIVIMLVGNKADLRHLRAVSTEDAQSFAEKENTFFMETSALESLNVENAFTEVLTQIYRVVSRKALDVGDDPAALPKGQTI-NIGTKDDVSAVKKTGCCS 458
            QI  TAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL++ R H ++N+ IMLVGNK DL H RAVS E+ + FA++    FME SA  + NVE AF +    IY+ +     DV ++   +  G  I         S+ +  GCCS
Sbjct:   58 QIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIYKKIQDGVFDVSNESYGIKVGYAIPGQSGGAGSSSSQGGGCCS 210          
The following BLAST results are available for this feature:
BLAST of DY259818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
RAB25_RABIT3.522e-3451.95Ras-related protein Rab-25 OS=Oryctolagus cuniculu... [more]
RAB25_HUMAN6.007e-3463.25Ras-related protein Rab-25 OS=Homo sapiens GN=RAB2... [more]
RAB25_MOUSE1.025e-3353.64Ras-related protein Rab-25 OS=Mus musculus GN=Rab2... [more]
RB11C_DICDI1.932e-3247.20Ras-related protein Rab-11C OS=Dictyostelium disco... [more]
RAB2A_MAIZE1.385e-3044.74Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
YPTC4_CHLRE1.809e-3043.40GTP-binding protein YPTC4 OS=Chlamydomonas reinhar... [more]
RAB2B_HUMAN1.809e-3044.03Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2... [more]
YPTV4_VOLCA1.172e-2943.59GTP-binding protein yptV4 OS=Volvox carteri GN=YPT... [more]
RAB2_LYMST1.172e-2945.14Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2B_MAIZE1.172e-2945.10Ras-related protein Rab-2-B OS=Zea mays GN=RAB2B P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP10YE17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY259818 ID=DY259818; Name=DY259818; organism=Citrus clementina; type=EST; length=1049bp
CTCAGATTTCCTTTACCGCCGGCCAAGAACGATATCGTGCTATCACAAGT
GCGTACTACCGGGGAGCTGTTGGTGCCTTGCTTGTCTATGATGTCACCCG
ACATGTTACTTTTGAGAATGTTGAGAGATGGTTGAAAGAGCTTCGGGATC
ACACAGACTCAAACATTGTGATAATGCTTGTGGGTAACAAGGCTGATTTG
CGTCACTTGCGTGCTGTTTCAACTGAGGATGCTCAGTCGTTCGCTGAGAA
AGAGAACACTTTCTTCATGGAAACCTCTGCCCTAGAGTCGTTGAATGTTG
AAAATGCCTTCACCGAAGTGCTCACTCAGATATATCGAGTTGTTAGTAGG
AAGGCTCTTGATGTAGGTGATGACCCAGCAGCCTTGCCCAAGGGTCAAAC
TATTAATATTGGTACTAAAGATGATGTATCGGCTGTGAAAAAGACTGGAT
GCTGCTCTGCATAATCTGCAGCTTCTAAGGAAATTCCAGGTGGTAAATAA
TAGTTTCTTTACCATTCAGACCTTACTTTCCATGAGTATGCAAACACCTT
GCCTTAATTTGCTTGGACCGGAACAAATACAATGTAATCAGCAAAGATCT
CTTCTCTTACCTTCCCCCTTTCCTTGTCGTATCCTCACCTCTGTTCACTT
AAGCGACCCCAACATCTCCCCACCTACCAATCTTACTCGGTATAAGCTTT
TAGATTTATCTCCCACTCTAGTTTACATTATACTCCAGCGAACGTAATAC
GACCTAAAATTAGTTATCAAAAATTCACTATTCTATTATTCCCAAACTGT
ACACCTCTCACGTAATATAGATCTTCAATCTCTTTCTACCAGACTTCGGT
CAATTCCCCCTTACACTACTCCTATACCCTCCATCAGCCAAGCACAGACA
ACAATTGTCATGCATCTCATTACCTCCTAAATCATATAAATTATACTGAC
TATTCCCGTACCTCTACAGGTCAATACATTTTGTAGGTGATACTCTAGAA
CAGCCCCTTCAGCCGTACACTCCACTACTTACCTCCCCCTCAAATCTCC
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